View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_8 (Length: 432)
Name: NF3295_low_8
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 7412991 - 7412817
Alignment:
| Q |
16 |
tatataaagggaagaatgaagtatatcataatgttggtttgacggtggtatattggacattttggcttccatactcgtggactctactatgattggttga |
115 |
Q |
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| T |
7412991 |
tatataaagggaagaatgaagtatatcataatgttggtttgacggtggtatattggacattttggcttccatactcgtggactctactatgattggttga |
7412892 |
T |
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| Q |
116 |
gatgttgtattggcttgttaatgcatttggctcccttatgatttatagtttgataaattttcaaatataactagg |
190 |
Q |
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| T |
7412891 |
gatgttgtattggcttgttaatgcatttggctcccttatgatttatagtttgataaattttcaaatataactagg |
7412817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 7459071 - 7458897
Alignment:
| Q |
16 |
tatataaagggaagaatgaagtatatcataatgttggtttgacggtggtatattggacattttggcttccatactcgtggactctactatgattggttga |
115 |
Q |
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| T |
7459071 |
tatataaagggaagaatgaagtatatcataatgttggtttgacggtggtatattggacattttggcttccatactcgtggactctactatgattggttga |
7458972 |
T |
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| Q |
116 |
gatgttgtattggcttgttaatgcatttggctcccttatgatttatagtttgataaattttcaaatataactagg |
190 |
Q |
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| T |
7458971 |
gatgttgtattggcttgttaatgcatttggctcccttatgatttatagtttgataaattttcaaatataactagg |
7458897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 7412790 - 7412680
Alignment:
| Q |
219 |
tttcttggttttgtgattctatacattgatctctaattcaaatagtagtatcccaaactgttcttaaaaaattttaaaacaaattcttgtttgtgtatta |
318 |
Q |
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| T |
7412790 |
tttcttggttttgtgattctatacattgatctctaattcaaatagta---tcccaaacttttcttaaatttttttaaaacaaattcttgtttgtgtatta |
7412694 |
T |
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| Q |
319 |
aacatttcgtgatg |
332 |
Q |
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| T |
7412693 |
aacatttcgtgatg |
7412680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 7458867 - 7458757
Alignment:
| Q |
219 |
tttcttggttttgtgattctatacattgatctctaattcaaatagtagtatcccaaactgttcttaaaaaattttaaaacaaattcttgtttgtgtatta |
318 |
Q |
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| T |
7458867 |
tttcttggttttgtgattctatacattgatctctaattcaaatagta---tcccaaacttttcttaaatttttttaaaacaaattcttgtttgtgtatta |
7458771 |
T |
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| Q |
319 |
aacatttcgtgatg |
332 |
Q |
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|||||||||||||| |
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| T |
7458770 |
aacatttcgtgatg |
7458757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 7412633 - 7412553
Alignment:
| Q |
342 |
ctttcataggagaatctaacatatattactctctacaaatctagctaaatatttgcatagttttgaaaattaaaacctttg |
422 |
Q |
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| T |
7412633 |
ctttcataggagaatctaacatatattactctataaaaatctagctaaatatttgcatagttttgaaaattaaaacctttg |
7412553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 7458710 - 7458630
Alignment:
| Q |
342 |
ctttcataggagaatctaacatatattactctctacaaatctagctaaatatttgcatagttttgaaaattaaaacctttg |
422 |
Q |
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| T |
7458710 |
ctttcataggagaatctaacatatattactctataaaaatctagctaaatatttgcatagttttgaaaattaaaacctttg |
7458630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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