View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_10 (Length: 567)
Name: NF3296_high_10
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 50372368 - 50372924
Alignment:
| Q |
1 |
agctttaacccatgcccatgcaactgagttttgttggagttattctagctagtcctagtttattttggttcaattacagagacgacggtaactataatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50372368 |
agctttaacccatgcccatgcaactgagttttgttggagttattctagctagtcctagtttattttggttcaattacagagacgacggtaactatgatta |
50372467 |
T |
|
| Q |
101 |
ccgtacctacactttctgttgttattcccttttcactaagaattcagaatgctttcctttgttcctcttacatttccttcaatttccattgcactgtaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50372468 |
ccgtacctacactttctgttgttattcccttttcactaagaattcagaatgctttcctttgttcctcttacatttccttcaatttcctttgcactgtaat |
50372567 |
T |
|
| Q |
201 |
ttttatgaaccaaaactttgaccttccaaattcctgcaaatataaccaatatcaactgagctaaggaagaaacagagcattcaaattgaattagaataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50372568 |
ttttatgaaccaaaactttgaccttccaaattcctgcaaatataaccaatatcaactgagctaaggaagaaacagagcattcaaattgaattagaat-aa |
50372666 |
T |
|
| Q |
301 |
gaaaaatgataataatagaatagaaagcaggaactataacaagaggaaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctg |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50372667 |
gaaaaatgataataatagaatagaaagcgggaactataacaagaggaaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctg |
50372766 |
T |
|
| Q |
401 |
gttttcagaataaggttcaaatgtgcttaaaattcaaatattattaaattagcctagtgcataaacgagaacaacttaagctattctcaataaaaatgtt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50372767 |
gttttcagaataaggttcaaatgtgcttaaaattcaaa---tattaaattagcctagagcataaacgagaacaacttaagctattctcaataaaaatgtt |
50372863 |
T |
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| Q |
501 |
gcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtcaatgacctttgatac |
561 |
Q |
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| T |
50372864 |
gcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtcaatgacctttgatac |
50372924 |
T |
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