View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_12 (Length: 530)
Name: NF3296_high_12
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 43844929 - 43844428
Alignment:
| Q |
12 |
cagttactttatagtcttgtccttgcaatgtgctttccttcattccttggttcttaatcttagtattatggaacagtggatttgaatttgatcatattag |
111 |
Q |
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| T |
43844929 |
cagttactttatagtcttgtccttgcaatgtgctttccttcattccttggttcttaatcttagtattatggaacagtggatttgaatttga--atattag |
43844832 |
T |
|
| Q |
112 |
accctcttgtcaaagtttcaatattatctttatatttgttcatttttcttcaacaatctgaagaataatcagaagtaacacaatgaactttgtaatagcc |
211 |
Q |
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| T |
43844831 |
accctcttgtcaaagtttcaatattatctttatatttgttcatttttcttcaacaatctgaagaataatcagaagtaacacaatgaactttgtgatagcc |
43844732 |
T |
|
| Q |
212 |
tattccagaggaacttggcatcccatcatgacttctgatacaaccatccaaagttactggttgaattggaaggttttggtttgtgtcatattaatcatac |
311 |
Q |
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| T |
43844731 |
tattccagaggaacttggcatcccatcatgacttctgatacaaccatccaaagttactggttgaattggaaggttttggtttgtgtcatattaatcatac |
43844632 |
T |
|
| Q |
312 |
tttcaaccatcttttcatcatttcttatatgcaagtacgaggttttacttttatcatggaagccaacaagaaatgatgacatggaaatccaaaaagaaac |
411 |
Q |
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| T |
43844631 |
tttcaaccatcttttcatcatttcttatatgcaagtacgaggttttacttttatcatggaagccaacaagaaatgatgacatggaaatccaaaaagaaac |
43844532 |
T |
|
| Q |
412 |
atcatcttcatcaattttgtacgaggatgaaacttggaagcctagcctaaagggaattcacccggcatggttgttggcttttagaatttttgcatttatt |
511 |
Q |
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| T |
43844531 |
atcatcatcatcaattttgtacgaggatgaaacttggaagcctagcctaaagggaattcacccggcatggttgttggcttttagaatttttgcatttatt |
43844432 |
T |
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| Q |
512 |
gtgc |
515 |
Q |
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|||| |
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| T |
43844431 |
gtgc |
43844428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 520
Target Start/End: Complemental strand, 34894745 - 34894643
Alignment:
| Q |
418 |
ttcatcaattttgtacgaggatgaaacttggaagcctagcctaaagggaattcacccggcatggttgttggcttttagaatttttgcatttattgtgcct |
517 |
Q |
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|||| |||||||||| ||||||||||||||||||||| | | || ||||||||||| || ||| | ||||||||| || ||||||| |||||||||| | |
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| T |
34894745 |
ttcagcaattttgtatgaggatgaaacttggaagccttgtttgaaaggaattcaccctgcttggcttttggcttttcgagtttttgcgtttattgtgctt |
34894646 |
T |
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| Q |
518 |
ttg |
520 |
Q |
| |
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||| |
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| T |
34894645 |
ttg |
34894643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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