View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_17 (Length: 494)
Name: NF3296_high_17
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Complemental strand, 45596621 - 45596144
Alignment:
| Q |
17 |
atattttacaatcttttgtttaatttgcagcattttctcagacatctttgatgaaaagaggtttattagttctcttgctgatgatataaaaatcattaag |
116 |
Q |
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| T |
45596621 |
atattttacaatcttttgtttaatttgcagcattttctcagacatctttgacgaaaagaggtttattagttctcttgctgatgatataaaaatcattaac |
45596522 |
T |
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| Q |
117 |
aaacttcccaaggagctggctaatgcaactaaaatggtgaaacaattcaaaagctggtctggtatggattactatcaaaatgagattgcagccctttgga |
216 |
Q |
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| T |
45596521 |
aaacttcccaaggagctggctaatgcccctaaaatggtgaaacaattcaaaagctggtctggtatggattactatcaaaatgagattgcagccctttggg |
45596422 |
T |
|
| Q |
217 |
ataatttcaaagtatgtaatctctttgtatataaatttctatcttattgttgatttatcatttattgaccttaatatctaagttctctaacatactctac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45596421 |
ataatttcaaagtatgtaatctctttgtatataaatttctatcttattgttgatttatcatttattgaccttaatatctaagttctctaacatactctac |
45596322 |
T |
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| Q |
317 |
aattttcttacgattgactaaaggttattcaagcttccaaatcagattctcgactagcaaataaccatctacctcaagatattcaaaagcttcgctgccg |
416 |
Q |
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| T |
45596321 |
aattttcttacgattgactaaaggttattcaagcttccaaatcagattctcgactagcaaataaccatctacctcaagatattcaaaagcttcgctgccg |
45596222 |
T |
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| Q |
417 |
tgcttgttatgaagctcttcgtttttctcctcacattgaacagatggggaaggtatatcagtagatacaaactcttgt |
494 |
Q |
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| T |
45596221 |
tgcttgttatgaagctcttcgtttttctcctcgcattgaacagatggggaaggtatatcagtagatacaaactcttgt |
45596144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 27152022 - 27151886
Alignment:
| Q |
338 |
aggttattcaagcttccaaatcagattctcgactagcaaataaccatctacctcaagatattcaaaagcttcgctgccgtgcttgttatgaagctcttcg |
437 |
Q |
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||||||||| ||||| ||||| ||||| || ||||| || ||| ||||||||| ||| |||||||||||||| ||||| ||||| |||||||| || || |
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| T |
27152022 |
aggttattcgtgcttcaaaatccgattcacggctagcgaacaacaatctacctccagacattcaaaagcttcgttgccgagcttgctatgaagcactccg |
27151923 |
T |
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| Q |
438 |
tttttctcctcacattgaacagatggggaaggtatat |
474 |
Q |
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| T |
27151922 |
tttctctcctcgtattgaacaaataggaaaggtatat |
27151886 |
T |
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