View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_18 (Length: 489)
Name: NF3296_high_18
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Original strand, 32713134 - 32713595
Alignment:
| Q |
13 |
catcacaagccaaattcctatagcatccgcacaagaattcacttttctaggtatgacaaattcaaacttcccaatttagctccaataatcttttaatatt |
112 |
Q |
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| T |
32713134 |
catcacaagccaaattcctatagcatccgcacaagaattcgcttttctaggtatgacaaattcaaacttcccaatttagctccaataatcttttaatatt |
32713233 |
T |
|
| Q |
113 |
gattaacagactccacccaacagctgaccctcgttaccatactcaagattagacaccactagtcttgaatctacatgaagctccaatttatgaaagccac |
212 |
Q |
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| T |
32713234 |
gattaacagactccacccaacagctgaccctcgttaccatactcaagattagacaccactagtcttgaatctacatgaagctccaatttatgaaagccac |
32713333 |
T |
|
| Q |
213 |
tctctctagctatctttaaatctttgaaaactctccagaactctgctacaaatatagtacacactcccatacactttgaaaatccacaagtccactcacc |
312 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32713334 |
tctctctagctatctttaaacctttgaaaactctccagaactctgctacaaatatactacacactcccatacactttgaaaatccacaagtccactcacc |
32713433 |
T |
|
| Q |
313 |
tctatcattacgcaaaattcctccgcaaccagacatactattacctctagtggctctacccaaatttagccgaatccatcccatcgccggaggttgtcac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| || ||||||||||| |
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| T |
32713434 |
tctatcattacgcaaaattcctccgcaaccagacatactattacctctagtggctccaccaatatttagccgaatccatcccatcaccagaggttgtcac |
32713533 |
T |
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| Q |
413 |
ctaatattctccattaccaaagtgctattatccatccacggtttaatgggaaacacaaaagt |
474 |
Q |
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| T |
32713534 |
ctaatattctccattaccaaagtgctattatccatccacggtttaatgggcaacacaaaagt |
32713595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 423
Target Start/End: Complemental strand, 14220062 - 14219796
Alignment:
| Q |
160 |
attagacaccactagtcttgaatctacatgaagctccaatttatgaaagccactctctctagctatctttaaatctttgaaaac---tctccagaactct |
256 |
Q |
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|||||||||||||| | || |||||| || |||||||| ||||| ||| |||| |||| |||||||||||||| |||| |||| || || |||||| |
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| T |
14220062 |
attagacaccactacttttaaatctaaattaagctccattttataaaatccacgctctatagctatctttaaacctttaaaaaaaattccacataactct |
14219963 |
T |
|
| Q |
257 |
gctacaaatatagtacacactcccatacactttgaaaatccacaagtccactcacctctatcattacgcaaaattcctccgcaaccagacatactattac |
356 |
Q |
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|||||||| | | ||||||||||| | |||||||||||||||| | ||||||||||||||||||| ||||||| | | ||| | |||| |||||||| |
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| T |
14219962 |
gctacaaacacactacacactccctaaagctttgaaaatccacaaattcactcacctctatcattacaaaaaattcttacacaatcggacacactattac |
14219863 |
T |
|
| Q |
357 |
ctctagtggctctacccaaatttagccgaatccatcccatcgccggaggttgtcacctaatattctc |
423 |
Q |
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||||||| |||| | || |||||| |||| |||||| || || || ||| ||||||||| ||||| |
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| T |
14219862 |
ctctagtagctccattcatatttaggcgaacccatcctattgctggcagttttcacctaatgttctc |
14219796 |
T |
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