View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_19 (Length: 455)
Name: NF3296_high_19
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 439
Target Start/End: Original strand, 28330846 - 28331276
Alignment:
| Q |
9 |
gagatgaagtatttgaaaaattattgtaattcgttgactctacannnnnnnnaaactgaaaatgtataaaaatgaatttcttatagtttatgaaatttaa |
108 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28330846 |
gagatgaagtatttcaaaaattattgtaattcgttgactctacattttttttaaactgaaaatgtataaaaatgaatttcttatagtttatgaaatttaa |
28330945 |
T |
|
| Q |
109 |
taatttgaaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttgttaagaagtgaatc |
208 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28330946 |
ttatttgaaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaacatggttgttgttaagaagtgaatc |
28331045 |
T |
|
| Q |
209 |
taacacatcattgcgcaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaa |
308 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331046 |
taacacatcattgcacaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaa |
28331145 |
T |
|
| Q |
309 |
ctggtcatctttgcatgcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331146 |
ctggtcatctttgcatgcacaccttgtggatcaaagggacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaa |
28331245 |
T |
|
| Q |
409 |
taattttcttaaactcttgagacttttcatc |
439 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
28331246 |
taattttcttaaactcttgagacttttcatc |
28331276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 116 - 435
Target Start/End: Original strand, 28296409 - 28296731
Alignment:
| Q |
116 |
aaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttg---ttaagaagtgaatctaac |
212 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||| |||||||||||||| ||| |
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|
| T |
28296409 |
aaaagcaacactaaccagaaaaagatgcaccatctcattgcggctcaattcataagtgctttctccaataatattgttgctattaagaagtgaatccaac |
28296508 |
T |
|
| Q |
213 |
acatcattgcgcaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactgg |
312 |
Q |
| |
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||||||||| |||| || ||||| | ||||||| |||||||| |||||||| |||||||||||||| |||||||||||| ||||| || || || ||| |
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| T |
28296509 |
acatcattgaacacctcaaaatcaccattggaagctcttgaacaaattctttcttcaataattccattaaaaatatcacacaacttttttatacaattgg |
28296608 |
T |
|
| Q |
313 |
tcatctttgcatgcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataat |
412 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||| |||||| |
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| T |
28296609 |
tcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaatattaggcctaccagctgcttccatgtaactccaaataat |
28296708 |
T |
|
| Q |
413 |
tttcttaaactcttgagactttt |
435 |
Q |
| |
|
|||| ||||||||||||||||| |
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|
| T |
28296709 |
gttctcaaactcttgagactttt |
28296731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 115 - 433
Target Start/End: Original strand, 28304301 - 28304616
Alignment:
| Q |
115 |
gaaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttgttaagaagtgaatctaacac |
214 |
Q |
| |
|
||||| ||| |||||||||||||||| | ||| | |||||| |||||| | |||| ||||| ||||||| |||||| || ||||||||||||||| | |
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|
| T |
28304301 |
gaaaaccaacactaaccagaaacagacataacattttattgcgactcaattgcgaagtagtttcgccaatattgttgttattgagaagtgaatctaaccc |
28304400 |
T |
|
| Q |
215 |
atcattgcgcaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtc |
314 |
Q |
| |
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|||||||| ||| | |||| ||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
28304401 |
atcattgcaaacc---tcatcagctttggaagctcttgaacaaattctttcttcaataattccataaaaaatatcacataacttcttcatgtaactggtc |
28304497 |
T |
|
| Q |
315 |
atctttgcatgcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataattt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||| | |
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|
| T |
28304498 |
atctttgcatgcacaccttgtggatcaaagggacgaagaattggaaagaaatctgaaacattaggcttaccagctttttccatgataccccaaataatgt |
28304597 |
T |
|
| Q |
415 |
tcttaaactcttgagactt |
433 |
Q |
| |
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| | |||||||| |||||| |
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|
| T |
28304598 |
tttcaaactctttagactt |
28304616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 116 - 439
Target Start/End: Original strand, 28320477 - 28320794
Alignment:
| Q |
116 |
aaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttgttaagaagtgaatctaacaca |
215 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||| | | ||||||||||||||||||||| |
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|
| T |
28320477 |
aaaatcaacactaaccagaaacagatgcaccatctcactgcggctcaattccgaagttgcttctccaatat---taatattaagaagtgaatctaacaca |
28320573 |
T |
|
| Q |
216 |
tcattgcgcaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtca |
315 |
Q |
| |
|
||||||| ||| || |||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||| | | |||||| |
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|
| T |
28320574 |
tcattgcaaacctcaa---caactttggaggatcttgaacgaattctttcttcaataattccatcaaaaatctcacacaacttcttcatatgattggtca |
28320670 |
T |
|
| Q |
316 |
tctttgcatgcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataatttt |
415 |
Q |
| |
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|| |||||| || |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||| | |
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| T |
28320671 |
tccttgcatacaaaccttgtggatctaagggacgaagaattggaaagaaatctgaaatattaggcttaccagcttcttccatgataccccaaataatggt |
28320770 |
T |
|
| Q |
416 |
cttaaactcttgagacttttcatc |
439 |
Q |
| |
|
|||||| ||||||||||| ||||| |
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|
| T |
28320771 |
cttaaattcttgagacttctcatc |
28320794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 125 - 439
Target Start/End: Original strand, 28309912 - 28310223
Alignment:
| Q |
125 |
actaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttgttaagaagtgaatctaacacatcattgcgc |
224 |
Q |
| |
|
||||||| |||| | ||||||||| ||||||||| |||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||| | |
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|
| T |
28309912 |
actaacctgaaataaatgcaccatttcattgcggctcaatttattagtggtttcttcaatat---tgtaattaagaagtgaatctaacacatcattgcac |
28310008 |
T |
|
| Q |
225 |
accacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtcatctttgcat |
324 |
Q |
| |
|
||| | ||||| |||||| ||||||||||||||||| |||||| |||||||||||||| ||||| ||||| ||||| | | |||| ||| |||| | |
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|
| T |
28310009 |
accttagaatcagaattggaatctcttgaactaattctttcttcaattattccatcaaaaatctcacacaactttttcatatgattggtaatccttgcgt |
28310108 |
T |
|
| Q |
325 |
gcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataattttcttaaactc |
424 |
Q |
| |
|
| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||| || |
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|
| T |
28310109 |
gtattctttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgataccccacataacgttcttaaattc |
28310208 |
T |
|
| Q |
425 |
ttgagacttttcatc |
439 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28310209 |
ttgagacttttcatc |
28310223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 28288719 - 28288689
Alignment:
| Q |
192 |
ttgttaagaagtgaatctaacacatcattgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28288719 |
ttgttaagaagtgaatctaacacatcattgc |
28288689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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