View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_high_23 (Length: 408)

Name: NF3296_high_23
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_high_23
NF3296_high_23
[»] chr4 (6 HSPs)
chr4 (1-407)||(46865382-46865788)
chr4 (68-364)||(46901325-46901622)
chr4 (184-269)||(46874370-46874455)
chr4 (161-274)||(46892166-46892282)
chr4 (7-63)||(46892012-46892068)
chr4 (7-63)||(46874211-46874267)
[»] chr8 (1 HSPs)
chr8 (180-398)||(22689866-22690090)
[»] chr3 (6 HSPs)
chr3 (184-364)||(19847177-19847360)
chr3 (63-288)||(27300804-27301026)
chr3 (218-337)||(27310811-27310930)
chr3 (7-65)||(27300673-27300731)
chr3 (177-210)||(27310660-27310693)
chr3 (379-407)||(27310977-27311005)
[»] chr5 (1 HSPs)
chr5 (251-359)||(27441080-27441188)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 46865382 - 46865788
Alignment:
Q  1 aaagaatacaagatgattgtaacaatttaaactgtttggtttccatgtatcgtattctgactcattcaagctgcagttgcaatagcaaattcaacaaaag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865382 aaagaattcaagatgattgtaacaatttaaactgtttggtttccatgtatcgtattctgactcattcaagctgcagttgcaatagcaaattcaacaaaag 46865481  T
Q  101 ctatcattccaacttcgcgaaaaaccttaacaggttctgccaatgatgcatatgcacctaccaccttccctgcaagacttgtggcaaaggaagaggagca 200  Q
    |||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865482 ctatcaatccaacttcacgaaaagccttaacaggttctggcaatgatgcatatgcacctaccaccttccctgcaagacttgtggcaaaggaagaggagca 46865581  T
Q  201 ggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgattcacttcttgttcttcccaacctgcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865582 ggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgattcacttcttgttcttcccaacctgcca 46865681  T
Q  301 agtgcagtggagaactgagttgagttttgtgctcttggaaacacccttcatctggataaggattctactccacagacagaattttggaaacatggtcatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865682 agtgcagtggagaactgagttgagttttgtgctcttggaaacacccttcatctggataaggattctactccacagacagaattttggaaacatggtcatt 46865781  T
Q  401 ggtgatg 407  Q
    |||||||    
T  46865782 ggtgatg 46865788  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 46901325 - 46901622
Alignment:
Q  68 aagctgcagttgcaatagcaaattcaacaaaagctatcattccaacttcgcgaaaaaccttaacaggttctgccaatgatgcatatgcacctaccacctt 167  Q
    ||||||||||||| |||| ||| ||||||||| |||||||||||||||| | |||| ||| |||||||  |||||||||| | ||     |||| |||||    
T  46901325 aagctgcagttgccatagtaaactcaacaaaatctatcattccaacttcaccaaaagcctcaacaggtattgccaatgattc-ta-----ctactacctt 46901418  T
Q  168 ccctgcaag---acttgtggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaatta---aacaagatcaatcgtgtttatggtgat 261  Q
    | | |||||   |||  || ||||||| |||||||||| |||||||| ||| |||||| |||||||||||   || ||||||||| || |||||||||||    
T  46901419 caccgcaagtctactcatgacaaaggatgaggagcaggataagaagaagcacttacttaggttgaaattaggcaagaagatcaatggtatttatggtgat 46901518  T
Q  262 tggattgatgattcacttcttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaaca-cccttcatctggataag 360  Q
    ||||||||||||| ||  |||||| |||||||| |||| |||||| |||||| ||||  |||  |||||||||||||||||| ||| ||||||| |||||    
T  46901519 tggattgatgattgaccacttgtttttcccaacttgcctagtgcaatggagacctgaagtgaactttgtgctcttggaaacaccccctcatctgtataag 46901618  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 46874370 - 46874455
Alignment:
Q  184 gcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattga 269  Q
    |||||||||||||||||||| |||||||  | | ||||| |||||||||| | | ||||||||||| |||| ||||||||||||||    
T  46874370 gcaaaggaagaggagcaggcaaagaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattga 46874455  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 46892166 - 46892282
Alignment:
Q  161 ccaccttccctgcaag---acttgtggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatgg 257  Q
    |||||| |||||||||   |||||||| ||||||||| ||||| | || |||||  | | ||||| |||||||||| | | ||||||||||| |||| ||    
T  46892166 ccacctcccctgcaagtctacttgtggaaaaggaagaagagcatgttaggaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacgg 46892265  T
Q  258 tgattggattgatgatt 274  Q
    |||||||||||||||||    
T  46892266 tgattggattgatgatt 46892282  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 46892012 - 46892068
Alignment:
Q  7 tacaagatgattgtaacaatttaaactgtttggtttccatgtatcgtattctgactc 63  Q
    |||||||||||| |||||| | ||||||||||||||||||||||  | |||||||||    
T  46892012 tacaagatgattataacaaatgaaactgtttggtttccatgtatattgttctgactc 46892068  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 46874211 - 46874267
Alignment:
Q  7 tacaagatgattgtaacaatttaaactgtttggtttccatgtatcgtattctgactc 63  Q
    |||||||||||| ||||||||  |||| ||||||||||||||||  | |||||||||    
T  46874211 tacaagatgattataacaattgcaactttttggtttccatgtatattgttctgactc 46874267  T

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Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 180 - 398
Target Start/End: Complemental strand, 22690090 - 22689866
Alignment:
Q  180 tgtggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagat---caatcgtgtttatggtgattggattgatgattca 276  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    ||||  | | |||| |||||||||||||||||||    
T  22690090 tgtggcaaaggaagaggagcaggctaagaagaagcgtttactttggttgaaattaaacaagaagaccaatactatatatgctgattggattgatgattca 22689991  T
Q  277 cttcttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaaca-cccttcatctggataaggattctactccacag 375  Q
    | |||| |||| ||||||  ||||||||||| ||||| ||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| |||| | |    
T  22689990 cctcttattctacccaactagccaagtgcagaggagacctgagttgaattttgtgctcttggaaacaccccctcatctggataatgattcttctccgctg 22689891  T
Q  376 ac--agaattttggaaacatggtca 398  Q
    ||  |||||||||||||||| ||||    
T  22689890 acaaagaattttggaaacatcgtca 22689866  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 184 - 364
Target Start/End: Original strand, 19847177 - 19847360
Alignment:
Q  184 gcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaaca---agatcaatcgtgtttatggtgattggattgatgattcacttc 280  Q
    |||||||||| |||||| |||||||||| || ||||||||||| |||||||||||   ||||||||  | | |||| |||||||||||||||||||  ||    
T  19847177 gcaaaggaagtggagcaagctaagaagaagcctttactttggtggaaattaaacacgaagatcaatactatatatgctgattggattgatgattcatctc 19847276  T
Q  281 ttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaacacccttcatctggataaggatt 364  Q
    ||||| |||||||| |||||||||||| ||||| || |||||| |||||||||||||||||| | |||||||||||||||||||    
T  19847277 ttgtttttcccaacttgccaagtgcagaggagatctaagttgaattttgtgctcttggaaactcacttcatctggataaggatt 19847360  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 288
Target Start/End: Original strand, 27300804 - 27301026
Alignment:
Q  63 cattcaagctgcagttgcaatagcaaattcaacaaaagctatcattccaacttcgcgaaaaaccttaacaggttctgccaatgatgcatatgcacctacc 162  Q
    |||| ||| ||||||||| ||||||||||||||||| ||||| ||||||||||  | ||   ||||   || |||||||||||||||||      |||||    
T  27300804 cattgaagttgcagttgctatagcaaattcaacaaacgctatgattccaactttaccaattgccttgttagtttctgccaatgatgcat------ctacc 27300897  T
Q  163 accttccctgcaag---acttgtggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtg 259  Q
    |||| ||| |||||   |||||||| ||||||||| || ||||| ||||| |  | | ||||| |||||||||| | | ||||||||||| |||||||||    
T  27300898 acctccccggcaagtctacttgtggaaaaggaagatgaacaggcaaagaaaaaacgtatacttgggttgaaattcagcgagatcaatcgtatttatggtg 27300997  T
Q  260 attggattgatgattcacttcttgttctt 288  Q
    ||||||||||||||  |||||||||||||    
T  27300998 attggattgatgatcgacttcttgttctt 27301026  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 27310811 - 27310930
Alignment:
Q  218 tactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgattcacttcttgttcttcccaacctgccaagtgcagtggagaactg 317  Q
    ||||| |||| ||||| | ||||||||||||| ||||||||||||| |||||||||| |  |||||||||||| ||  ||| ||||||| |||||| ||     
T  27310811 tacttgggttaaaattcagcaagatcaatcgtatttatggtgattgaattgatgattgaactcttgttcttccaaagttgctaagtgcaatggagacctc 27310910  T
Q  318 agttgagttttgtgctcttg 337  Q
    |||||| |||||||||||||    
T  27310911 agttgaattttgtgctcttg 27310930  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 27300673 - 27300731
Alignment:
Q  7 tacaagatgattgtaacaatttaaactgtttggtttccatgtatcgtattctgactcat 65  Q
    |||||||||||| |||||||| ||||| |||||||| |||||||| | |||||||||||    
T  27300673 tacaagatgattataacaattgaaactatttggttttcatgtatcttgttctgactcat 27300731  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 27310660 - 27310693
Alignment:
Q  177 acttgtggcaaaggaagaggagcaggctaagaag 210  Q
    ||||||||||||||||||||||||||||||||||    
T  27310660 acttgtggcaaaggaagaggagcaggctaagaag 27310693  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Original strand, 27310977 - 27311005
Alignment:
Q  379 gaattttggaaacatggtcattggtgatg 407  Q
    |||||||||||||||||||||||||||||    
T  27310977 gaattttggaaacatggtcattggtgatg 27311005  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 27441080 - 27441188
Alignment:
Q  251 tttatggtgattggattgatgattcacttcttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaacacccttca 350  Q
    |||||||||||||||| ||||||| |  |||||||||||||||| ||||||||| || | |||  |||||||| |||||||||||||||||| |||||||    
T  27441080 tttatggtgattggatcgatgattaaactcttgttcttcccaacttgccaagtgaagagaagacatgagttgaattttgtgctcttggaaactcccttca 27441179  T
Q  351 tctggataa 359  Q
    |||||||||    
T  27441180 tctggataa 27441188  T

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