View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_25 (Length: 402)
Name: NF3296_high_25
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 3632950 - 3633321
Alignment:
| Q |
15 |
cagagactcagaaattcgtagcatcaccaaaaattaaattagacccaatgattattcatttattctgctagcatggctgcaaatttggtgtgctgcatgc |
114 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3632950 |
cagaaactcagaaattcgtagcaccaccaaaaattaaattagacccaatgattattcatttattctgctagcatggctgcaaatttggtgtgctgcatgc |
3633049 |
T |
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| Q |
115 |
gtatcagccttattgtcacatggcctagtaaaaattagagtatgtttttgggtaatggatg-cattaatggtcgaacgtgatggagtattgttttctaga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
3633050 |
gtatcagccttattgtcacatggcctagtaaaaattagagtatgtttttgggtaatggatggcattaatggtggaacgtgatggagtattgttttctaga |
3633149 |
T |
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| Q |
214 |
gtggttgattgatgaatcaaacttgtggcatgatgatcatgaggttcaacgatggagtgttagcctctataattagaacacttcaacagctctaaattat |
313 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3633150 |
gtggttgattaatgaatcaaacttgtggcatgatgatcatgaggttcaacgatggagtgttagcctctataattagaacacttcaacagctataaattat |
3633249 |
T |
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| Q |
314 |
gacagtttcctactagacttcatagttgtttttggtactacagatatttatctctatgtatgtgatcaaatg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3633250 |
gacagtttcctactagacttcatagttgtttttggtactacagatatttatctctatgtatgtgatcaaatg |
3633321 |
T |
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