View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_27 (Length: 397)
Name: NF3296_high_27
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 45103082 - 45103443
Alignment:
| Q |
18 |
aaaagtctctcgtcagccgcgcactcagtccaacaaactctcagccgttggatcgagatgcaacattgatctaacgactgactgaggttttgttggacgg |
117 |
Q |
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| T |
45103082 |
aaaagtctctcgtcagccgcgcactcagtccaacaaactctcagccgttggatcgagatgcaacattgatctaacgact----gaggttttgttggacgg |
45103177 |
T |
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| Q |
118 |
actgcatggcaatagaaaatcagagctgagtccaacaaagtccattagttgattataattatatctaacccttaaagcaggtaagaaatgtctctctggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103178 |
actgcatggcaatagaaaatcagagctgagtccaacaaagtccattagttgattataattatatctaacccttaaagcaggtaagaaatgtctctctggc |
45103277 |
T |
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| Q |
218 |
cctataggttgtccaaccaactctcaattgttgaatcgagctacaaccctgtccaacagctgagattttgttggacaatttcacggccgtagaaaatttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103278 |
cctataggttgtccaaccaactctcaattgttgaatcgagctacaaccctgtccaacagctgagattttgttggacaatttcacggccgtagaaaatttg |
45103377 |
T |
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| Q |
318 |
ggttgagtaagcatacattattaccttgaatattaagtcaccttgacaaggaccagtgaagatagt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103378 |
ggttgagtaagcatacattattaccttgaatattaagtcaccttgacaaggaccagtgaagatagt |
45103443 |
T |
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