View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_28 (Length: 393)
Name: NF3296_high_28
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 55334399 - 55334657
Alignment:
| Q |
1 |
aattaggtgaatgagtgtttgtatgctattatattttgaccttgctagtttgtagagaaatttaagcacggttaaaaattgagaaataggatnnnnnnnn |
100 |
Q |
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| T |
55334399 |
aattaggtgaatgagtgtttgtatgctattatattttgaccttgctagtttgtagagaaatataagcacggttaaaaattgagaaataggataaaaaaaa |
55334498 |
T |
|
| Q |
101 |
catcaaagtggattgtttgatacatacgtttaaagactccaaattgcagcgcaatatatgaactaattcaaatacataagtgggtccatgtatgatcttg |
200 |
Q |
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| T |
55334499 |
catcaaagtggattgtttgatacgtacgtttaaagactccaaattgcagcgcaatatcagaactaattcaaatacataagtgggtccatgtatgatcttg |
55334598 |
T |
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| Q |
201 |
acaaggataatgcttgcacaagttgaaaccgtggatggaactttattgtcatggggatt |
259 |
Q |
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| T |
55334599 |
acaaggataatgcttgcacaagttgaaaccgtggatggaactttattgtcatggggatt |
55334657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 248052 - 247954
Alignment:
| Q |
257 |
attcatatcatgtaacaagaatagcatatataagtgttttgttttgttcacgcaagtacatacatatcaatcaaaacttgtctttttgccatccaattt |
355 |
Q |
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| T |
248052 |
attcatatcatgtaacaagaatagcatatataagtgttttgttttgtccatgcaagtacatacatatcaatcaaaacttgtctttttgccatccaattt |
247954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 43603165 - 43602906
Alignment:
| Q |
3 |
ttaggtgaatgagtgtttgtatgctattatattttgaccttgctagtttgtagagaaatttaagcacggttaaaaattgagaaataggatnnnnnnnn-- |
100 |
Q |
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| T |
43603165 |
ttaggtgaatgaatgtttgtttgctattatattttgatcttgctagtttgtagagaaatttaagcacggttaaaaattgagaaataggataaaaaaaaaa |
43603066 |
T |
|
| Q |
101 |
--catcaaagtggattgtttgatacatacgtttaaagactccaaattgcagcgcaatatatgaactaattcaaatacataagtgggtccatgtatgatct |
198 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
43603065 |
aacatcaaagtggattgttt-atacgtacgtttaaagactccaaattgcagcgcaatatcagaactgattcaaatacataagtgggtccatgtatggtct |
43602967 |
T |
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| Q |
199 |
tgacaaggataatgcttgcacaagttgaaaccgtggatggaactttattgtcatggggatt |
259 |
Q |
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| T |
43602966 |
tgacaaggataatgcttgcacaagttgaaaccgtggatggaccatttctgtcatggggatt |
43602906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 43608657 - 43608398
Alignment:
| Q |
3 |
ttaggtgaatgagtgtttgtatgctattatattttgaccttgctagtttgtagagaaatttaagcacggttaaaaattgagaaataggatnnnnnnnn-- |
100 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43608657 |
ttaggtgaatgaatgtttgtttgctattatattttgatcttgctagtttgtagagaaatttaagcacggttaaaaattgagaaataggataaaaaaaaaa |
43608558 |
T |
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| Q |
101 |
--catcaaagtggattgtttgatacatacgtttaaagactccaaattgcagcgcaatatatgaactaattcaaatacataagtgggtccatgtatgatct |
198 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
43608557 |
aacatcaaagtggattgttt-atacgtacgtttaaagactccaaattgcagcgcaatatcagaactgattcaaatacataagtgggtccatgtatggtct |
43608459 |
T |
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| Q |
199 |
tgacaaggataatgcttgcacaagttgaaaccgtggatggaactttattgtcatggggatt |
259 |
Q |
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| T |
43608458 |
tgacaaggataatgcttgcacaagttgaaaccgtggatggaccatttctgtcatggggatt |
43608398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 43614149 - 43613890
Alignment:
| Q |
3 |
ttaggtgaatgagtgtttgtatgctattatattttgaccttgctagtttgtagagaaatttaagcacggttaaaaattgagaaataggatnnnnnnnn-- |
100 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43614149 |
ttaggtgaatgaatgtttgtttgctattatattttgatcttgctagtttgtagagaaatttaagcacggttaaaaattgagaaataggataaaaaaaaaa |
43614050 |
T |
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| Q |
101 |
--catcaaagtggattgtttgatacatacgtttaaagactccaaattgcagcgcaatatatgaactaattcaaatacataagtgggtccatgtatgatct |
198 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
43614049 |
aacatcaaagtggattgttt-atacgtacgtttaaagactccaaattgcagcgcaatatcagaactgattcaaatacataagtgggtccatgtatggtct |
43613951 |
T |
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| Q |
199 |
tgacaaggataatgcttgcacaagttgaaaccgtggatggaactttattgtcatggggatt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
43613950 |
tgacaaggataatgcttgcacaagttgaaaccgtggatggaccatttctgtcatggggatt |
43613890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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