View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_high_29 (Length: 388)

Name: NF3296_high_29
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_high_29
NF3296_high_29
[»] chr8 (9 HSPs)
chr8 (41-377)||(2012454-2012790)
chr8 (266-367)||(2019246-2019347)
chr8 (250-377)||(1968048-1968176)
chr8 (210-342)||(1964450-1964581)
chr8 (261-367)||(2008849-2008956)
chr8 (269-367)||(2013396-2013494)
chr8 (266-367)||(1962465-1962566)
chr8 (270-367)||(2015863-2015960)
chr8 (269-343)||(2005493-2005567)
[»] chr3 (2 HSPs)
chr3 (203-377)||(18189366-18189541)
chr3 (135-196)||(18189278-18189339)
[»] chr1 (1 HSPs)
chr1 (266-377)||(5901644-5901755)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 41 - 377
Target Start/End: Complemental strand, 2012790 - 2012454
Alignment:
Q  41 tgttatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagtt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2012790 tgttatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagtt 2012691  T
Q  141 gtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2012690 gtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgag 2012591  T
Q  241 tttcattcatgaaattggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaatt 340  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2012590 tttcattcatgaacttggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcattt 2012491  T
Q  341 ctcaaagttacttatccagcttcatccggacattcat 377  Q
    |||||||||||||||||||||||||||||||||||||    
T  2012490 ctcaaagttacttatccagcttcatccggacattcat 2012454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 2019347 - 2019246
Alignment:
Q  266 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 365  Q
    ||||||||| |||||| |||| ||||| |||||||||||||| || ||||| |||||| |||| |||||||||||||| ||| ||||| | |||||||||    
T  2019347 tttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcat 2019248  T
Q  366 cc 367  Q
    ||    
T  2019247 cc 2019246  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 1968048 - 1968176
Alignment:
Q  250 tgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagt 348  Q
    |||| ||| ||||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| |||     
T  1968048 tgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaaga 1968147  T
Q  349 tacttatccagcttcatccggacattcat 377  Q
     |||| | || |||||||| ||| |||||    
T  1968148 gacttgttcaacttcatccagactttcat 1968176  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 342
Target Start/End: Original strand, 1964450 - 1964581
Alignment:
Q  210 taaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtc 308  Q
    ||||||||||| | ||||| |||||||||| ||||||    ||| |||| ||| |||||| ||||| ||||| ||||||||||| ||||||||||||||     
T  1964450 taaaatctatataggtcttgggctaggtgactttcat----gaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgtt 1964545  T
Q  309 gggtatgga--cacttagtccctattcttcaattct 342  Q
    ||||||  |  || |||||| |||||||||||||||    
T  1964546 gggtatatatccatttagtctctattcttcaattct 1964581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 2008956 - 2008849
Alignment:
Q  261 tcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccag 359  Q
    ||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| |||  |||| | |||    
T  2008956 tcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcag 2008857  T
Q  360 cttcatcc 367  Q
    ||||||||    
T  2008856 cttcatcc 2008849  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 2013494 - 2013396
Alignment:
Q  269 catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc 367  Q
    |||||| |||| |||||| ||||| |||||||||||||| || ||| | |||||| |||| ||||||||||| || ||| ||||| | |||||||||||    
T  2013494 catggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaattttcgaagctacttgttcagcttcatcc 2013396  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 367
Target Start/End: Original strand, 1962465 - 1962566
Alignment:
Q  266 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 365  Q
    ||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||||||||| ||  ||||| | |||||||||    
T  1962465 tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat 1962564  T
Q  366 cc 367  Q
    ||    
T  1962565 cc 1962566  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 2015960 - 2015863
Alignment:
Q  270 atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc 367  Q
    ||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||||||||| |||  |||| | |||||||||||    
T  2015960 atggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatcc 2015863  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 2005567 - 2005493
Alignment:
Q  269 catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctc 343  Q
    |||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| ||||||||||||||||    
T  2005567 catggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctc 2005493  T

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Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 18189366 - 18189541
Alignment:
Q  203 ttggctttaaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttcc 301  Q
    ||||||||||||||||||||||| |||||||   ||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| ||||||||    
T  18189366 ttggctttaaaatctatacaagtttttggctgcatgagtttcattcatgaacttagcatcaaatttccatggataaaacaattcacattgcagttgttcc 18189465  T
Q  302 aggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatccggacattcat 377  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  18189466 aggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatcttcatccagacattcat 18189541  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 18189278 - 18189339
Alignment:
Q  135 gaagttgtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaacc 196  Q
    |||||||||||||  ||| | ||||||  ||||||||| |||||||||||||||||||||||    
T  18189278 gaagttgtgaaatatagaaacactggtttataccaaaaaatcttaaaaccaaactttcaacc 18189339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 5901644 - 5901755
Alignment:
Q  266 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 365  Q
    ||||||||| ||||||||||||||||| ||| |||||||||   ||||| | || |||||| |||||||| ||||||| ||| ||||| | ||||| |||    
T  5901644 tttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcagctccat 5901743  T
Q  366 ccggacattcat 377  Q
    || ||| |||||    
T  5901744 ccagactttcat 5901755  T

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