View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_high_3 (Length: 781)

Name: NF3296_high_3
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_high_3
NF3296_high_3
[»] chr5 (3 HSPs)
chr5 (16-763)||(7010568-7011330)
chr5 (149-249)||(34731215-34731315)
chr5 (156-249)||(16290794-16290887)
[»] scaffold1298 (1 HSPs)
scaffold1298 (16-156)||(1980-2118)
[»] chr3 (4 HSPs)
chr3 (160-255)||(39795319-39795414)
chr3 (149-250)||(7038549-7038650)
chr3 (149-251)||(45818671-45818773)
chr3 (172-251)||(32490847-32490926)
[»] chr8 (3 HSPs)
chr8 (160-251)||(12595855-12595946)
chr8 (169-252)||(26543874-26543957)
chr8 (161-251)||(40028766-40028856)
[»] chr1 (5 HSPs)
chr1 (154-222)||(30209719-30209787)
chr1 (149-252)||(42472062-42472165)
chr1 (160-223)||(4593714-4593777)
chr1 (171-250)||(49236112-49236191)
chr1 (149-211)||(49287981-49288043)
[»] chr2 (5 HSPs)
chr2 (149-252)||(40054532-40054635)
chr2 (154-255)||(36241427-36241528)
chr2 (156-223)||(27338715-27338782)
chr2 (172-213)||(36264547-36264588)
chr2 (149-258)||(6452401-6452509)
[»] chr4 (4 HSPs)
chr4 (149-212)||(36625605-36625668)
chr4 (149-223)||(33451295-33451369)
chr4 (149-251)||(19181482-19181584)
chr4 (153-218)||(35074377-35074442)
[»] chr7 (1 HSPs)
chr7 (149-223)||(39594607-39594681)


Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 16 - 763
Target Start/End: Original strand, 7010568 - 7011330
Alignment:
Q  16 agcagagaatatggagagaagtgggattaaatcacaaagagtgggagtcaagggaatcgaagagggtaagcgcgtgtttatgttatcctatttgtaaccc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  7010568 agcagagaatatggagagaagtgggattaaatcacaaagagtgggagtcaagggaatcgaagagggtaagcacgtgtttatgctatcctatttgtaaccc 7010667  T
Q  116 aactaaaataaaggattagaataatgaaagatgaataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7010668 aactaaaataaaggattagaataatgaaagatgaataggattattttatcatatcttattagtgcaccaaataagagatttaagtaggatatgataattt 7010767  T
Q  216 tatcatataatgtctctttatccttcgcaccaaacgaaccgtataccattaagagcggatttagaaataaattattagcgagactaaatttattgaccta 315  Q
    |||||||||||| ||| ||||||| ||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  7010768 tatcatataatgcctccttatcctacgcaccaaacgaatcgtataccactaaggacggatttagaaataaattattagcgagactaaatttattgaccta 7010867  T
Q  316 agaactaaattttatttact-------------aaaaatagttgtaacaattaaatttataaagaacttgtcaacnnnnnnn-ctaaatttataaagaaa 401  Q
    ||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  7010868 agaactaaattttatttacttaaaagtaatactaaaaatagttgtaacaattaaatttataaagaacttgtcaacaaaaaaaactaaatttataaagaaa 7010967  T
Q  402 atagtataacatcaatttgtaaaaaatgagctgaaataacattattattaactattccggccaccgatcaccaatgttgttacatagttgactcatcata 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  7010968 atagtataacatcaatttgtaaaaaatgagctgaaataacattattattaactattccggccaccgatcaccaatattgttacatagttgactcatcgta 7011067  T
Q  502 tattttatagttgaaaaaacacgtttaatggttacagttgtcactgacaaaaccagagctaacttcataagtttgtacaccacatcaaatatagatgcat 601  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7011068 tattttatagttgaagaaacacgttcaatgattacagttgtcaccgacaaaaccagagctaacttcataagtttgtacatcacatcaaatatagatgcat 7011167  T
Q  602 ctctct-gacacccttcattgatacacatttcatgaccacttgcggaaatgccaaaatttgcaaaccaaaaaataatttttcagtcaccaaatatctctt 700  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7011168 ctctctcgacacccttcattgatactcatttcatgaccacttgcggaaatgccaaaatttgcaaaccaaaaaatattttttcagtcaccaaatatctctt 7011267  T
Q  701 gccaccatctatagaacatatgttactcatgctcttgctctccatcatagcggatggaagtag 763  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7011268 gccaccatctatagaacatatgttactcatgctcttgctctccatcatagcggatggaagtag 7011330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 34731315 - 34731215
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 248  Q
    |||||| ||| |||||| | ||||||| |||||||||| ||| ||||||| |||||||||||| | |||||||||  | |||||||||| | ||||||||    
T  34731315 aataggtttagtttatcctttcctattggtgcaccaaacaagggatttaaataggatatgatagtgttatcatatcctatctctttatcatgcgcaccaa 34731216  T
Q  249 a 249  Q
    |    
T  34731215 a 34731215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 16290794 - 16290887
Alignment:
Q  156 ttattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaa 249  Q
    |||||||||| | ||||||  | |||||||| ||  |||||||  |||||| ||||||||||||||||  |||||||||||||| |||||||||    
T  16290794 ttattttatcctttcctatgggagcaccaaacaaaggatttaaacaggataagataattttatcatatcctgtctctttatcctgcgcaccaaa 16290887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1298 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: scaffold1298
Description:

Target: scaffold1298; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 2118 - 1980
Alignment:
Q  16 agcagagaatatggagagaagtgggattaaatcacaaagagtgggagtcaagggaatcgaagagggtaagcgcgtgtttatgttatcctatttgtaaccc 115  Q
    |||||| |||||||||| |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2118 agcagaaaatatggagaaaagtgggattaaattacaaag--tgggagtcatgggaatcgaagagggtaagcgcgtgtttatgctatcctatttgtaaccc 2021  T
Q  116 aactaaaataaaggattagaataatgaaagatgaataggat 156  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  2020 aactaaaacaaatgattagaataatgaaggatgaataggat 1980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 39795319 - 39795414
Alignment:
Q  160 tttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacgaacc 255  Q
    |||||||||| ||||| |||||||||| || | ||||||||||||||||||| | ||||||||| |||||||| |||||| |||||||||| ||||    
T  39795319 tttatcatattctattggtgcaccaaacaacatatttaagtaggatatgatagtgttatcatatcatgtctctctatcctgcgcaccaaacaaacc 39795414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 7038650 - 7038549
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 248  Q
    |||||| ||| |||||||||||||||||||| |||||||||  ||||||| ||||||| |||||||||||||||| | |||||| |||| | |||| |||    
T  7038650 aataggtttaatttatcatatcctattagtgtaccaaataatggatttaaataggataagataattttatcatatcaggtctctctatcatgcgcatcaa 7038551  T
Q  249 ac 250  Q
    ||    
T  7038550 ac 7038549  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 45818671 - 45818773
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 248  Q
    |||||| |||||||||| | | ||| |  ||||||||| ||  |||||||||||||||||||| | |||||||||  |||||  ||||||||||||||||    
T  45818671 aataggtttattttatcttttgctactgatgcaccaaacaacggatttaagtaggatatgatagtgttatcatatcctgtcttcttatccttcgcaccaa 45818770  T
Q  249 acg 251  Q
    |||    
T  45818771 acg 45818773  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 32490926 - 32490847
Alignment:
Q  172 tattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacg 251  Q
    |||| |||||||||| ||  ||||||| ||| |||||||| | |||||||||  |||||||||||||| |||||||||||    
T  32490926 tattggtgcaccaaacaaaggatttaaatagaatatgatagtgttatcatatcctgtctctttatcctgcgcaccaaacg 32490847  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 12595855 - 12595946
Alignment:
Q  160 tttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacg 251  Q
    ||||||||||| ||||| ||||||||| || ||||||||  |||||| |||||||||||||||| |||||||| |||| | |||||||||||    
T  12595855 tttatcatatcatattactgcaccaaacaaaagatttaaacaggataggataattttatcatatcatgtctctctatcttgcgcaccaaacg 12595946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 26543957 - 26543874
Alignment:
Q  169 tcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacga 252  Q
    ||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||  ||||||  |||||| ||||||||||||    
T  26543957 tcctattggtgcaccaaacaagaaatttgagtaggatatgataattttatcatatcctgtctccctatcctgcgcaccaaacga 26543874  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 40028856 - 40028766
Alignment:
Q  161 ttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacg 251  Q
    ||||||| |||| || | |||||||| || ||||| | | ||||||||||| ||| |||||||  |||||| ||||||| |||||||||||    
T  40028856 ttatcatttcctgttggcgcaccaaacaacagattgaggcaggatatgatattttaatcatatcctgtctccttatcctgcgcaccaaacg 40028766  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 30209787 - 30209719
Alignment:
Q  154 gattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcata 222  Q
    |||||||||||||| | ||||| ||| |||||| || ||||||||||||||||||||||||||||||||    
T  30209787 gattattttatcattttctattggtgtaccaaacaacagatttaagtaggatatgataattttatcata 30209719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 42472062 - 42472165
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 248  Q
    |||||| |||||||||||| ||||| |  ||||||||| ||  |||||||||||||||||| | | |||||||||  |||||  ||||||| ||||||||    
T  42472062 aataggtttattttatcatttcctactgatgcaccaaacaacggatttaagtaggatatgacagtgttatcatattctgtcttcttatcctgcgcaccaa 42472161  T
Q  249 acga 252  Q
    ||||    
T  42472162 acga 42472165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 4593777 - 4593714
Alignment:
Q  160 tttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 223  Q
    |||||||| | ||||| ||||| |||| ||||||||||||||| |||||||| | |||||||||    
T  4593777 tttatcattttctattggtgcatcaaacaagagatttaagtagaatatgatagtgttatcatat 4593714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 49236191 - 49236112
Alignment:
Q  171 ctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaac 250  Q
    ||||| |||||||||| || |||||| |  |||||||||||||| ||||||||  |||||  ||||||| ||||||||||    
T  49236191 ctattggtgcaccaaacaatagatttcatcaggatatgataattgtatcatatcctgtctagttatcctgcgcaccaaac 49236112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 49288043 - 49287981
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgata 211  Q
    |||||| |||||||||||| |  |||| ||||||||||||| | |||||| ||||||||||||    
T  49288043 aataggtttattttatcattttgtattggtgcaccaaataacaaatttaaataggatatgata 49287981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 40054532 - 40054635
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 248  Q
    |||||| ||| |||||||| | ||||| |||||||||| ||||||||||| |||||||| ||| | ||||||||| ||||||| ||||| | |||| |||    
T  40054532 aataggtttagtttatcattttctattggtgcaccaaacaagagatttaaataggatataatagtgttatcatatcatgtctcgttatcatgcgcatcaa 40054631  T
Q  249 acga 252  Q
    ||||    
T  40054632 acga 40054635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 36241528 - 36241427
Alignment:
Q  154 gattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacgaa 253  Q
    |||||||||||||| | |||||| || |||||| ||  |||||||||  |||||||||||||||||||||  |||||  ||||| |  ||||||||||||    
T  36241528 gattattttatcattttctattattgtaccaaacaaatgatttaagtgagatatgataattttatcatattctgtcttcttatcatgtgcaccaaacgaa 36241429  T
Q  254 cc 255  Q
    ||    
T  36241428 cc 36241427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 27338782 - 27338715
Alignment:
Q  156 ttattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 223  Q
    ||||||||||||||| | |||||||| |||| | ||||||||||||||||||||| | | ||||||||    
T  27338782 ttattttatcatatcattttagtgcatcaaacatgagatttaagtaggatatgattaatgtatcatat 27338715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 36264588 - 36264547
Alignment:
Q  172 tattagtgcaccaaataagagatttaagtaggatatgataat 213  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  36264588 tattagtgcaacaaataagagatttaagtaggctatgataat 36264547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 6452509 - 6452401
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 248  Q
    |||||| ||| ||||||||||| |||| ||||| ||||  |  ||||||| | ||||| ||||||||||||||||  ||||||  |||| | ||||||||    
T  6452509 aataggtttaatttatcatatcttattggtgcatcaaaccatggatttaaattggataggataattttatcatatcctgtctc-ctatcatgcgcaccaa 6452411  T
Q  249 acgaaccgta 258  Q
    || |||||||    
T  6452410 acaaaccgta 6452401  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 36625605 - 36625668
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataa 212  Q
    |||||| ||| ||||||||||||||||||||||||||| || | |||||| |||||||||||||    
T  36625605 aataggtttaatttatcatatcctattagtgcaccaaacaacaaatttaaataggatatgataa 36625668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 33451369 - 33451295
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 223  Q
    |||||| ||||||||||||||| |||| |||||||||| ||   |||||||||||||| |||| |||||||||||    
T  33451369 aataggtttattttatcatatcatattggtgcaccaaacaacgaatttaagtaggatacgatagttttatcatat 33451295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 19181482 - 19181584
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 248  Q
    |||||| ||| ||||||||||| | || |||||||||| || |||||  |  |||||| |||||||||||||||| |||||||| |||| |  |||||||    
T  19181482 aataggtttaatttatcatatcatgttggtgcaccaaacaatagattggatcaggataggataattttatcatatcatgtctctctatcatgtgcaccaa 19181581  T
Q  249 acg 251  Q
    |||    
T  19181582 acg 19181584  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 35074442 - 35074377
Alignment:
Q  153 ggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttat 218  Q
    ||||||||||||||| |  |||| |||||| ||| ||   ||||||||||||||||||||||||||    
T  35074442 ggattattttatcattttttattggtgcacaaaacaaagaatttaagtaggatatgataattttat 35074377  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 39594681 - 39594607
Alignment:
Q  149 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 223  Q
    |||||| ||| |||| |||||| |||| |||||||||| ||  |||||||||||||||||||| |||||||||||    
T  39594681 aataggtttaatttagcatatcttattggtgcaccaaacaacggatttaagtaggatatgatagttttatcatat 39594607  T

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