View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_30 (Length: 376)
Name: NF3296_high_30
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 29713010 - 29712860
Alignment:
| Q |
1 |
attacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctc |
100 |
Q |
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| T |
29713010 |
attacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttcatcaggtctattggaagttcaagccaatttggctttgtcgtgctc |
29712911 |
T |
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| Q |
101 |
tcacctttagctttctttgtacaggaccccttcatgctacaaacgaagctg |
151 |
Q |
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| T |
29712910 |
tcacctttagctttcttcgtacaggaaagcttcatgctaaaatcgaagctg |
29712860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 212 - 349
Target Start/End: Complemental strand, 29712799 - 29712662
Alignment:
| Q |
212 |
gtgagttacagttacaaattgcagaccaatgatagtactgaaatagccaaaaagatagatgaaaataaattgaaaattataccaaccttttaaattgaat |
311 |
Q |
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| T |
29712799 |
gtgagctacagttacaaattgcagaccaatgatagtactgaaatagccaaaaagatagatgaaaataaattggaaattacaccaaccttgtaaattgaac |
29712700 |
T |
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| Q |
312 |
ggtgaagatgaggtgatgaacagtatacttgtatgtat |
349 |
Q |
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| T |
29712699 |
ggtgaagatgaagtgatgaactgtatacctgtatgtat |
29712662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 29747009 - 29747155
Alignment:
| Q |
5 |
cgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcac |
104 |
Q |
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| T |
29747009 |
cgtgcacttgtcacaatatcaatagtaccaagtctctgaagtatgttctttgtcaagcctatcggaagttcaagccagtttggctttgtcgtgctatcaa |
29747108 |
T |
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| Q |
105 |
ctttagctttctttgtacaggaccccttcatgctacaaacgaagctg |
151 |
Q |
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| T |
29747109 |
ctttagctttcttgatacacgaccccttcatgctacaaacgatgctg |
29747155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 29751881 - 29751765
Alignment:
| Q |
1 |
attacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctc |
100 |
Q |
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| T |
29751881 |
attacgtgcacttgtcacaatttcaacggtatcaagtctccgaagtatgttctttgtcaagtcaattggaagttcaatccagtttggctttgtcatgcac |
29751782 |
T |
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| Q |
101 |
tcacctttagctttctt |
117 |
Q |
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||| |||| ||||||| |
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| T |
29751781 |
tcaactttcactttctt |
29751765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 29698866 - 29698789
Alignment:
| Q |
44 |
agtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcacctttagctttctttgta |
121 |
Q |
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| T |
29698866 |
agtatgttcttcgtcaattctattggaagttcaagccagtttggctttcttgtgctctcatcttttgctatctctgta |
29698789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 29649058 - 29648978
Alignment:
| Q |
7 |
tgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttgg |
87 |
Q |
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| T |
29649058 |
tgcatttgttacaatttcaacagtatcaactccttgaaggatgttaattgtgatgtctcttggaagttcaagccaatttgg |
29648978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 29721065 - 29721021
Alignment:
| Q |
59 |
aggtctattggaagttcgagccaatttggctttgtcgtgctctca |
103 |
Q |
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| T |
29721065 |
aggtctcttggaagttcaagccaatttggctttggtgtgctctca |
29721021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 1152974 - 1153117
Alignment:
| Q |
1 |
attacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctc |
100 |
Q |
| |
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|||||||||| |||| ||||||||||||||||| ||||||||||| |||||| | |||| |||||||||||||| ||||||||||| ||| | |||||| |
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| T |
1152974 |
attacgtgcacttgttacaatttcaacagtatccagtctttgaaggatgttccttatcaagtctattggaagttgaagccaatttggatttcttgtgctc |
1153073 |
T |
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| Q |
101 |
tcacctttagctttctttgtacaggaccccttcatgctacaaac |
144 |
Q |
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||| |||| ||||| | ||| |||| ||||||||||||||| |
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| T |
1153074 |
tcaactttcgctttttccacacaagacctcttcatgctacaaac |
1153117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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