View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3296_high_31 (Length: 371)
Name: NF3296_high_31
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 9679284 - 9679627
Alignment:
| Q |
10 |
aagaatatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9679284 |
aagaaaatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
9679383 |
T |
|
| Q |
110 |
tttgtttcttgttctttttggtccaatccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9679384 |
tttgtttcttgttctttttggtccactccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
9679483 |
T |
|
| Q |
210 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9679484 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgttaaatgtgatccttcaacaaatagggtatcttctc |
9679583 |
T |
|
| Q |
310 |
ttgttcttgatggattctctctttcaggacatatcggtaaaagc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9679584 |
ttgttcttgatggattctctctttcaggacatattggtaaaagc |
9679627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 27380394 - 27380218
Alignment:
| Q |
161 |
tttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaagatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgc |
260 |
Q |
| |
|
||||||||| ||||| |||| || |||||||| ||||| ||| || ||||||| ||| ||||||| ||| ||||||||||||||||| | |||||| |
|
|
| T |
27380394 |
tttcaatgatgatatattaggcttaattgtgtttaaagctggtttacaagatcctaaacacaaactcatttcatggaatgaagatgattacactccttgt |
27380295 |
T |
|
| Q |
261 |
aattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctcttgttcttgatggattctctctttcagg |
337 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| ||||| || ||||| || | ||||||||||||||||||||||| |
|
|
| T |
27380294 |
aattgggaaggtgtgaaatgtgattcttcaaacaatagagtcacttctgttatacttgatggattctctctttcagg |
27380218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University