View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_36 (Length: 343)
Name: NF3296_high_36
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 38697398 - 38697710
Alignment:
| Q |
18 |
agaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcag |
117 |
Q |
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| T |
38697398 |
agaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcag |
38697497 |
T |
|
| Q |
118 |
gatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697498 |
gatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaacc |
38697597 |
T |
|
| Q |
218 |
agcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaa |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697598 |
agcagtgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaa |
38697697 |
T |
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| Q |
318 |
gatgttgatgatg |
330 |
Q |
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||||||||||||| |
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| T |
38697698 |
gatgttgatgatg |
38697710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 38628883 - 38628571
Alignment:
| Q |
18 |
agaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcag |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628883 |
agaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcag |
38628784 |
T |
|
| Q |
118 |
gatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaacc |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628783 |
gatggtctctctcagattgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaacc |
38628684 |
T |
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| Q |
218 |
agcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
38628683 |
agcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctctacggatgaacatgttgtcttgtagaaaccatacttcaaa |
38628584 |
T |
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| Q |
318 |
gatgttgatgatg |
330 |
Q |
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||||| ||||||| |
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| T |
38628583 |
gatgtcgatgatg |
38628571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 14256401 - 14256293
Alignment:
| Q |
183 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcgg |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| | || || || ||||||||||||||||||| | || ||||| || |||||||| || | |
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| T |
14256401 |
acaaagcaatcatgaaaatgcattctaatcaatccagcacctataccaggattgagtgaaacagctttgtcaattgcacttctcactattgcctcagcag |
14256302 |
T |
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| Q |
283 |
atggacatg |
291 |
Q |
| |
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||||||||| |
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| T |
14256301 |
atggacatg |
14256293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 30652278 - 30652335
Alignment:
| Q |
18 |
agaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgccttagctt |
75 |
Q |
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|||||||||||||| | || ||||| |||||||| ||||||||||||| |||||||| |
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| T |
30652278 |
agaatgtctgcacacaagacagttttaggacatgcggcctctatttgtgtcttagctt |
30652335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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