View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3296_high_4 (Length: 707)
Name: NF3296_high_4
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_4 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 286 - 707
Target Start/End: Complemental strand, 50373323 - 50372902
Alignment:
| Q |
286 |
tggttaacgatgaatgtgtacgactggattttctattaaactatctattaggcgctagttagcaagcacacatagtattaggttggattgaagtgtttag |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373323 |
tggttaacgatgaatgtgtacgactggattttctattaaactatctattaggcgctagttggcaagcacacatagtattaggttggattgaagtgtttag |
50373224 |
T |
|
| Q |
386 |
cttccactaactttctaaaatgtatagatgaccgtaaaaagtagaattagtgtgcagttaagctgttttctctcatcattctgcaaattggattgtggct |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373223 |
cttccactaactttctaaaatgtatagatgaccgtaaaaagtagaattagtgtgcagttaagctgttttctctcatcattctgcaaattggattgtggct |
50373124 |
T |
|
| Q |
486 |
ctcatcattctcacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttatctgttttctttgattacg |
585 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
50373123 |
ctcatcattctaacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttaaccgttttctttgattacg |
50373024 |
T |
|
| Q |
586 |
ctttatgaagctgttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttg |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373023 |
ctttatgaagctgttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttg |
50372924 |
T |
|
| Q |
686 |
tatcaaaggtcattgacacatt |
707 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50372923 |
tatcaaaggtcattgacacatt |
50372902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 50373585 - 50373339
Alignment:
| Q |
8 |
gcagaacctgtgtagccgtaaaccagtgac----agtgagtggtgttgggaataggtttgttggagctagattgggaagtgaaaatatgtcgcacatatt |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373585 |
gcagaccctgtgtagccgtaaaccagtgactgacagtgagtggtgttgggaataggtttgttggagctagattgggaagtgaaaatatgtcgcacatatt |
50373486 |
T |
|
| Q |
104 |
gtgaagctaactcctgtgcacatgcacatgcacatgcttaagcagctttgggatatagtagtggttccaagctccagctcaaattagtcatttatttttt |
203 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373485 |
gtgaagctaactcctgtgcacatgc------------ttaagcagctttgggatatagtagtggttccaagctccagctcaaattagtcatttatttttt |
50373398 |
T |
|
| Q |
204 |
gtggattctatagggactttatatctctgaactgttcgtttggaatcctctttaactcc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373397 |
gtggattctatagggactttatatctctgaactgttcgtttggaatcctctttaactcc |
50373339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 48272529 - 48272567
Alignment:
| Q |
379 |
tgtttagcttccactaactttctaaaatgtatagatgac |
417 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48272529 |
tgtttagcttgcactaactttctaaaatgtatagatgac |
48272567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University