View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_41 (Length: 331)
Name: NF3296_high_41
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 29685566 - 29685900
Alignment:
| Q |
1 |
tcttcttctactggtttctctcacttcactactcttcagtctccactgatcagcctcttcactccaattgcaaaatnnnnnnnnn-----ttaacagcaa |
95 |
Q |
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| T |
29685566 |
tcttcttctactgatttctctcacttcactactctccggtctccactgatcagcctcttcactccaattgcaaaataaaaaaaaaaaaaattaacagcaa |
29685665 |
T |
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| Q |
96 |
aattcatttattgattatggttaaaaaactaaaactatgagannnnnnngggtacaaattgtgatttcttaatctgtgtggnnnnnnnnnctaacactaa |
195 |
Q |
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| T |
29685666 |
aattcatttattgattatggttaaaaaactaaaactatgagatttttttgggtacaaattgtgatttcttaatctgtgtggaaaaaaaaactaacactaa |
29685765 |
T |
|
| Q |
196 |
ttagggtatgtgttcacactaggtagtagtgagataacacaatcctttcctttcctttgactacgccaatatacctttgtcttactatttacgaaccaac |
295 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29685766 |
ttagggtatgtgttcacaataggtagtagtgagataacacaatcctttcctttcctttgactacgccaatatacctttgtcttactatttacgaaccaac |
29685865 |
T |
|
| Q |
296 |
aaccaggtaaccgtcactactctctgctcctcctc |
330 |
Q |
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||||||||||||||||||||||| ||||| ||||| |
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| T |
29685866 |
aaccaggtaaccgtcactactctttgctcatcctc |
29685900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 29680145 - 29680376
Alignment:
| Q |
19 |
tctcacttcactactcttcagtctccactgatcagcctcttcactccaattgcaaaatnnnnnnnnnttaacagcaaaattcatttattgattatggtta |
118 |
Q |
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| T |
29680145 |
tctcacttcactactctccagtctccact---cagtctcttcactccaaatgcaaaataaaaaaat-ttaacatcaaaattcatttattgattatggtta |
29680240 |
T |
|
| Q |
119 |
aaaaa-ctaaaactatgagannnnnnngggtacaaattgtgatttcttaatctgtgtggnnnnnnnnnctaacactaattagggtatgtgttcacactag |
217 |
Q |
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| T |
29680241 |
aaaaaactaaaattatgagattttgttgggtacaaattgtgatttcttaatctgtgtgtgacaaaaaaaaactaacaattagggtatgtgttcacactag |
29680340 |
T |
|
| Q |
218 |
gtagtagtgagataacacaatcctttcctttccttt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29680341 |
gtagtagtgagataacacaatcctttcctttccttt |
29680376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 29668370 - 29668482
Alignment:
| Q |
191 |
actaattagggtatgtgttcacactaggtagtagtg--------agataacacaatcctttcctttcctttgactacgccaatatacctttgtcttacta |
282 |
Q |
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| T |
29668370 |
actaattagggcatgtgttcacactagatagtagtagggagataagataacacgatcctttcctttcctttgactataccaatatacctttgtcttccta |
29668469 |
T |
|
| Q |
283 |
tttacgaaccaac |
295 |
Q |
| |
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|||||| |||||| |
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| T |
29668470 |
tttacggaccaac |
29668482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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