View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3296_high_48 (Length: 296)
Name: NF3296_high_48
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 57 - 277
Target Start/End: Original strand, 3833083 - 3833303
Alignment:
| Q |
57 |
agtggataggtattttcgtcctctaatttgtacgtatcatgtatatagatcaatgttaatacttaattaaaaagtctactaaatggatgtatataaaaca |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3833083 |
agtggataggtattttcgtcctctaatttgtacgtatcatatatatagatcaatgttaatacttaattaaaaagtctactaaatggatgtatataaaaca |
3833182 |
T |
|
| Q |
157 |
acaacattcatgaaacactaactacgcaccatgcctccatgacatgtccaggatatgtccttccatcttaaaattaaacaatatacataagagttttagt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3833183 |
acaacattcatgaaacactaactacgcaccatgcctccatgacatgtccaggatatgtccttccatcttaaaattaaacaatatacataagagttttagt |
3833282 |
T |
|
| Q |
257 |
agcaacatcaacctagaatat |
277 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3833283 |
agcaacatcaacctagaatat |
3833303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 126 - 270
Target Start/End: Complemental strand, 1419447 - 1419311
Alignment:
| Q |
126 |
aaaagtctactaaatggatgtatataaaacaacaacattcatgaaacactaactacgcaccatgcctccatgacatgtccaggatatgtccttccatctt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
1419447 |
aaaagtctactaaatggatgtatataaaacaaca---ttcatgaaaaactaactacacaccatgcctccatgactcgtccaggatatgcccttccatct- |
1419352 |
T |
|
| Q |
226 |
aaaattaaacaatatacataagagttttagtagcaacatcaacct |
270 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1419351 |
----tgaaacaatatacataagagttttagtagcgacatcaacct |
1419311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University