View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_high_51 (Length: 289)

Name: NF3296_high_51
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_high_51
NF3296_high_51
[»] chr2 (3 HSPs)
chr2 (100-275)||(4732939-4733115)
chr2 (20-97)||(4736285-4736362)
chr2 (100-200)||(26511105-26511205)
[»] chr6 (4 HSPs)
chr6 (100-266)||(16118418-16118585)
chr6 (131-244)||(20995934-20996048)
chr6 (109-165)||(32054981-32055037)
chr6 (119-210)||(20996801-20996892)
[»] chr7 (4 HSPs)
chr7 (119-244)||(9024955-9025081)
chr7 (132-205)||(22581275-22581348)
chr7 (189-250)||(30334968-30335030)
chr7 (98-161)||(5987697-5987760)
[»] chr8 (2 HSPs)
chr8 (100-257)||(33137403-33137561)
chr8 (110-208)||(33136950-33137048)
[»] chr1 (2 HSPs)
chr1 (102-238)||(12658988-12659123)
chr1 (100-145)||(6396167-6396212)
[»] chr5 (4 HSPs)
chr5 (137-249)||(8589030-8589144)
chr5 (100-210)||(19828081-19828191)
chr5 (212-260)||(19043767-19043815)
chr5 (117-244)||(19828480-19828608)
[»] chr4 (2 HSPs)
chr4 (189-275)||(41982511-41982598)
chr4 (100-163)||(41982597-41982660)
[»] chr3 (2 HSPs)
chr3 (100-196)||(53114193-53114290)
chr3 (137-233)||(27647352-27647449)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 4733115 - 4732939
Alignment:
Q  100 taaaagaacgtgttt-aaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtg 198  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4733115 taaaagaatgtgttttaactgttatttattatcttttgcatgtttaaa-tgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtg 4733017  T
Q  199 ttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttattacaaatatgcggttgctttcatct 275  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  4733016 ttaaaaaccactataaattctctttgttttctacatccacaaacatatgttattataaatatgtggttgctttcatct 4732939  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 4736362 - 4736285
Alignment:
Q  20 tatagtaactgcatggttcaacttgggtccacaacttccttcataaacccctcccatgtagtgatgaaaatcataact 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4736362 tatagtaactgcatggttcaacttgggtccacaacttccttcataaacccctcccatgtagtgatgaaaatcataact 4736285  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 26511105 - 26511205
Alignment:
Q  100 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 199  Q
    ||||||||| | ||||||  ||||||||||  || ||||||||| |||||||  | |||| |||||||   ||||||||||||||||| |||||||||||    
T  26511105 taaaagaacatatttaactattatttattacattctgcatgtttgaaatgaaacttcatctatgttgaatgtagtctccaaggtcttcatgcaaaagtgt 26511204  T
Q  200 t 200  Q
    |    
T  26511205 t 26511205  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 266
Target Start/End: Complemental strand, 16118585 - 16118418
Alignment:
Q  100 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 199  Q
    ||||||||  ||||||||| |||||||||| ||||| |||||||||||||||||| ||| |||||||| | || |||| || ||||||||| ||||| ||    
T  16118585 taaaagaatatgtttaaccattatttattaccttttccatgtttaaaatgaagtttcattcatgttgaacataatctcaaaagtcttcgtgtaaaagggt 16118486  T
Q  200 taaaaaccac-taaaattctctttgttttctacatccacaaacataggttattacaaatatgcggttg 266  Q
    |||||| ||| | |||||||||||| ||||||| | || || |||| | ||||||||||||| |||||    
T  16118485 taaaaatcacttcaaattctctttgctttctacgttcataagcatatgctattacaaatatgtggttg 16118418  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 20995934 - 20996048
Alignment:
Q  131 cttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac-taaaattctctttgttttct 229  Q
    |||||||||||||||||||||||| |||| ||||| | | ||||||||||||||||  |  ||| || |  |||||||| | ||||||  ||||||||||    
T  20995934 cttttgcatgtttaaaatgaagttccatcaatgttcaacatagtctccaaggtctttatttaaatgtttgcaaaaccacttcaaattcaatttgttttct 20996033  T
Q  230 acatccacaaacata 244  Q
    |||||||||| ||||    
T  20996034 acatccacaagcata 20996048  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 32054981 - 32055037
Alignment:
Q  109 gtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgtt 165  Q
    ||||||||| ||||||||||||| ||||||||||| | |||||||| ||| ||||||    
T  32054981 gtgtttaactgttatttattatcatttgcatgtttgagatgaagtttcatacatgtt 32055037  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 20996892 - 20996801
Alignment:
Q  119 gttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccact 210  Q
    ||||||||||| ||||||| ||||| |||| ||||| |||||||||||| | ||| ||| || |   ||||||||||||||| |||| ||||    
T  20996892 gttatttattaccttttgcgtgtttgaaataaagtttcatccatgttgaacgtagcctcgaacgatctcgtgcaaaagtgttgaaaaacact 20996801  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 9025081 - 9024955
Alignment:
Q  119 gttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccactaaaat-tc 217  Q
    |||||||||||  |||||||||||| |||||||||| ||||||| || | | ||||||||||||| ||| |||||||||||| |||||||||  ||| ||    
T  9025081 gttatttattactttttgcatgtttgaaatgaagtttcatccatcttcaacgtagtctccaaggtgttcatgcaaaagtgttgaaaaccacttcaatatc 9024982  T
Q  218 tctttgttttctacatccacaaacata 244  Q
    ||| |||||||||||||||||||||||    
T  9024981 tctctgttttctacatccacaaacata 9024955  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 22581348 - 22581275
Alignment:
Q  132 ttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaa 205  Q
    |||| ||||||||||||||| || |||||||||| | | |||| |||||| ||||| |||||||||||||||||    
T  22581348 ttttccatgtttaaaatgaactttcatccatgttaaccgtagtttccaagatcttcatgcaaaagtgttaaaaa 22581275  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 30335030 - 30334968
Alignment:
Q  189 tgcaaaagtgttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttat 250  Q
    |||||||||||  |||||||||  |||||||||||||||||||||||||||| |||| |||||    
T  30335030 tgcaaaagtgtggaaaaccacttgaaattctctttgttttctacatccacaagcatatgttat 30334968  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 5987760 - 5987697
Alignment:
Q  98 tttaaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatcca 161  Q
    ||||||| || |||||| || ||||||||||| ||||||||||||| ||| |||||| ||||||    
T  5987760 tttaaaaaaatgtgtttgactgttatttattaccttttgcatgtttgaaacgaagtttcatcca 5987697  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 33137561 - 33137403
Alignment:
Q  100 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 199  Q
    ||||| |||||||||||  ||||||||||| |||||| |||||| | |||||||| ||| |||||| ||| ||  ||||||  | ||| |||||||||||    
T  33137561 taaaaaaacgtgtttaattgttatttattaccttttgaatgtttgacatgaagtttcattcatgttcagcgtaacctccaatttattcatgcaaaagtgt 33137462  T
Q  200 taaaaaccac-taaaattctctttgttttctacatccacaaacataggttattacaaat 257  Q
      |||||||| | ||||||||||||||||||| ||||||||| ||| | ||||| ||||    
T  33137461 ggaaaaccacttcaaattctctttgttttctatatccacaaatatatgctattataaat 33137403  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 33136950 - 33137048
Alignment:
Q  110 tgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaacca 208  Q
    |||||||| ||||||||||| ||||||||| ||| |||||||||| |||||||||||| | |||  || |||||| ||  |||| |||||| |||||||    
T  33136950 tgtttaacggttatttattaccttttgcatatttgaaatgaagtttcatccatgttgaacgtagcatcaaaggtcgtcaggcaacagtgttgaaaacca 33137048  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 12659123 - 12658988
Alignment:
Q  102 aaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgtta 201  Q
    |||||| |||||||||  ||||||||||  |||| ||||||| ||||||| || |||||||||| | | ||  ||| ||||||||| ||||||||||||     
T  12659123 aaagaatgtgtttaact-ttatttattacatttt-catgtttgaaatgaaatttcatccatgttcaacgtatcctcgaaggtcttcatgcaaaagtgttg 12659026  T
Q  202 aaaaccac-taaaattctctttgttttctacatccaca 238  Q
    |||||||| | |||||||||||||||||||||||||||    
T  12659025 aaaaccacttcaaattctctttgttttctacatccaca 12658988  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 6396212 - 6396167
Alignment:
Q  100 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaa 145  Q
    |||||||| |||||||||  |||||||||||||||| |||||||||    
T  6396212 taaaagaatgtgtttaactattatttattatctttttcatgtttaa 6396167  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 8589030 - 8589144
Alignment:
Q  137 catgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac--taaaattctctttgttttctacatc 234  Q
    |||||||||||||||||| |||||||||| |   ||| |||||| |||||| |||||||||||| ||||||||  |||| || | |||||| |||||||     
T  8589030 catgtttaaaatgaagtttcatccatgttcaatgtagcctccaaagtcttcatgcaaaagtgttgaaaaccaccttaaatttttatttgttgtctacatg 8589129  T
Q  235 cacaaacataggtta 249  Q
    |||||||||| ||||    
T  8589130 cacaaacatatgtta 8589144  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 19828081 - 19828191
Alignment:
Q  100 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 199  Q
    |||||||| |||||||||  |||||||||||||||||||| ||| |||||||| | |||| ||||||| | ||| || |||| | ||| || ||||||||    
T  19828081 taaaagaatgtgtttaactattatttattatcttttgcatatttgaaatgaagattcatcgatgttgaacctagccttcaagattttcatggaaaagtgt 19828180  T
Q  200 taaaaaccact 210  Q
    | |||| ||||    
T  19828181 tgaaaatcact 19828191  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 19043815 - 19043767
Alignment:
Q  212 aaattctctttgttttctacatccacaaacataggttattacaaatatg 260  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  19043815 aaattctctttgttttctacacccacaagcatatgttattacaaatatg 19043767  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 19828608 - 19828480
Alignment:
Q  117 ccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac-taaaat 215  Q
    ||||||| ||| | ||||||||||||| ||| ||| || ||| |||||| | | |||  || ||||||||| | ||||||||| ||||||||| | ||||    
T  19828608 ccgttatctataaccttttgcatgtttgaaacgaaatttcatgcatgttcaacgtagcatcgaaggtcttcattcaaaagtgtgaaaaaccacttcaaat 19828509  T
Q  216 tctctttgttttctacatccacaaacata 244  Q
    | |||||||||||| | ||||||| ||||    
T  19828508 tgtctttgttttcttcgtccacaagcata 19828480  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 41982598 - 41982511
Alignment:
Q  189 tgcaaaagtgttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttattacaaatatgcggttgctttcatct 275  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| | ||| |||| | ||||||||||||| ||||| || |||||    
T  41982598 tgcaaaagtgttaaaaaccacttcaaattctctttgttttctacattcccaagcatatgctattacaaatatgtggttgtttccatct 41982511  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 41982660 - 41982597
Alignment:
Q  100 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatg 163  Q
    ||||||||| |||||||| ||||||||||| ||||| ||||||| |||| ||||| ||| ||||    
T  41982660 taaaagaacatgtttaactgttatttattaccttttacatgtttgaaattaagtttcattcatg 41982597  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 53114290 - 53114193
Alignment:
Q  100 taaaagaacgtgtttaaccgtt-atttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaag 196  Q
    |||||||||||||||||| ||| |||||||| | ||||||||||| ||||||| || |||| ||||||| | ||||||| || |||||| || |||||    
T  53114290 taaaagaacgtgtttaactgtttatttattaccatttgcatgtttgaaatgaattttcatcgatgttgaacgtagtctcaaaagtcttcatgtaaaag 53114193  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 27647449 - 27647352
Alignment:
Q  137 catgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccact-aaaattctctttgttttctacat 233  Q
    ||||||| |||||||||| ||||  | || | | ||| ||| |||||| || |||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  27647449 catgtttgaaatgaagtttcatctgtattcaacgtagcctcaaaggtcgtcatgcaaaagtgttgaaaactacttaaaattctttttgttttctacat 27647352  T

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