View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_57 (Length: 271)
Name: NF3296_high_57
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 98 - 256
Target Start/End: Complemental strand, 22978799 - 22978640
Alignment:
| Q |
98 |
aatagagcttctaatttctaaatgaataaataacaattgacaaacaaaatgtaccatttgcaagttgtgactgacat-atgtttgtgtaggatgattgtg |
196 |
Q |
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| T |
22978799 |
aatagggcttctaatttctaaatgaataaataacaattgacaaacaaaatgtaccatttgcaagttgtgactgacattatgtttgtgtaggatgattgtg |
22978700 |
T |
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| Q |
197 |
tcatttaggttctgccaaaatcaaatttttatgattactttgttatataaatgtgtggat |
256 |
Q |
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| T |
22978699 |
tcatttaggttctgccaaaatcaaatttttatgattactttgttatataaatgtgtggat |
22978640 |
T |
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Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 98 - 256
Target Start/End: Original strand, 1123804 - 1123970
Alignment:
| Q |
98 |
aatagagcttctaatttctaaatgaataaataacaat-------tgacaaacaaaatgtaccatttgcaagttgtgactgacat-atgtttgtgtaggat |
189 |
Q |
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||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1123804 |
aatagggcatctaatttctaaatgaataaataacaatcaaacattgacaaacaaaatgtaccatttgcaagttgtgactgacattatgtttgtgtaggat |
1123903 |
T |
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| Q |
190 |
gattgtgtcatttaggttctgccaaaatcaaatttttatgattactttgttatataaatgtgtggat |
256 |
Q |
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| T |
1123904 |
gattgtgtgatttaggttctgccaaaatcaaatttttatgattactttgttatataaatgtgtggat |
1123970 |
T |
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