View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_60 (Length: 258)
Name: NF3296_high_60
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32283124 - 32283364
Alignment:
| Q |
1 |
tactcaaatgtttt-taattgttaagtttgttatttgatacaaaaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacattttat |
99 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
32283124 |
tactcaaatgttttgtaattgttaagtttgttatttgacacaacaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacatgttct |
32283223 |
T |
|
| Q |
100 |
aagtcatattttgcttcttgagggtgatgagttccttgatataagaatacatgtgaagttgtgtcatcgagtttggcacaaatcttatatttgattatga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32283224 |
aagtcatattttgcttcttgagggtgatgagttccttgatataagaatacatgtgaagttgtgtcatcgagtttgacacaaatcttatatttgattatga |
32283323 |
T |
|
| Q |
200 |
aagatcctatgttatcgagattattcattcaattttctgtc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32283324 |
aagatcctatgttatcgagattattcattcaattttctgtc |
32283364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15702359 - 15702599
Alignment:
| Q |
1 |
tactcaaatgtttt-taattgttaagtttgttatttgatacaaaaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacattttat |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
15702359 |
tactcaaatgttttgtaattgttaagtttgttatttgacacaacaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacatgttct |
15702458 |
T |
|
| Q |
100 |
aagtcatattttgcttcttgagggtgatgagttccttgatataagaatacatgtgaagttgtgtcatcgagtttggcacaaatcttatatttgattatga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15702459 |
aagtcatattttgcttcttgagggtgatgagttccttgatataagaatacatgtgaagttgtgtcatcgagtttgacacaaatcttatatttgattatga |
15702558 |
T |
|
| Q |
200 |
aagatcctatgttatcgagattattcattcaattttctgtc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15702559 |
aagatcctatgttatcgagattattcattcaattttctgtc |
15702599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12513810 - 12514044
Alignment:
| Q |
1 |
tactcaaatgtttttaattgttaagtttgttatttgatacaaaaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacattttata |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12513810 |
tactcaaatgtttttaatttttaagtttgttatttgacacaacaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacatgttata |
12513909 |
T |
|
| Q |
101 |
agtcatattttgcttcttgagggtgatgagttccttgatataagaatacatgtgaagttgtgtcatcgagtttggcacaaatcttatatttgattatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
12513910 |
agtcatattttgcttcttgagggtgatgagttccttgatataagaatacatgtgaagttgtgtcatcgagtttggcgcaaatc-----tttgattatgaa |
12514004 |
T |
|
| Q |
201 |
agatcctatgttatcgagattattcattcaattttctgtc |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12514005 |
agatcctatgttatcgagattattcattcaattttctgtc |
12514044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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