View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_61 (Length: 256)
Name: NF3296_high_61
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 38613162 - 38612933
Alignment:
| Q |
14 |
agacatgaaaccacaagaattacatgagagttacaaaaacttaaaacttcaccaagccacggtatagatgtagggtttatggattaaattaaagattatc |
113 |
Q |
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| T |
38613162 |
agacatgaaaccacaagaattacatgagagttacaaaaacttaaa-cttcaccaagccacggtatagatgtagggtttatggattaaattaaagattatc |
38613064 |
T |
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| Q |
114 |
gataagccgactccaatttaattacccacatgtgctaacctatgaagtacctacacaaacaccggatgcgacacccatgctagcataataattatagaaa |
213 |
Q |
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| T |
38613063 |
gataagccgactccaatttaattacccacatgtgctaacctatgaagtacctacacaaacaccggatgcgacacccacgctagcataataattatagaaa |
38612964 |
T |
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| Q |
214 |
atgaattaactgaatgcactcgcatgtgtcg |
244 |
Q |
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| T |
38612963 |
atgaattaactgaatgtactcgcatgtgtcg |
38612933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 6294588 - 6294544
Alignment:
| Q |
198 |
ataataattatagaaaatgaattaactgaatgcactcgcatgtgt |
242 |
Q |
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| T |
6294588 |
ataataatttgagaaaatgaattaattgaatgcaatcgcatgtgt |
6294544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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