View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_66 (Length: 250)
Name: NF3296_high_66
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 29355680 - 29355513
Alignment:
| Q |
71 |
atcattgaagcaaaatatgtttgagttacataagtgtcatgtgttatcgtgggagccaattaatagtggttatggaaccaagttcgagtttcatacaaac |
170 |
Q |
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| T |
29355680 |
atcattgaagcaaaatatgtttgagttacataagtgtgatgtgttatagtgggagccaattaatagtagttatggaaccaagttcgagtttcatacaaac |
29355581 |
T |
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| Q |
171 |
tcaccacatgagatgctttaagagattacattatattttgcctttctttttaacgataaccttatatt |
238 |
Q |
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| T |
29355580 |
tcaccacatgagatgctttaagagattacgttatattttacctttctttttaacgataaccttatatt |
29355513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 24579948 - 24579848
Alignment:
| Q |
71 |
atcattgaagcaaaatatgtttgagttacataagtgtcatgtgttatcgtgggagccaattaatagtggttatggaaccaagttcgagtttcatacaaac |
170 |
Q |
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| T |
24579948 |
atcattggagcaaaaaatgtttgagttgcataagtgtaatgtgacattgtgggagtcacttaatattgggtgtggaatcaagttcgaatttcttgcaaac |
24579849 |
T |
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| Q |
171 |
t |
171 |
Q |
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| T |
24579848 |
t |
24579848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29355749 - 29355711
Alignment:
| Q |
1 |
caatctaaataggctgagtcataaaagttacattatttc |
39 |
Q |
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| T |
29355749 |
caatctaaataggccgagtcataaaagttacattatttc |
29355711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 26772376 - 26772453
Alignment:
| Q |
93 |
gagttacataagtgtcatgtgttatcgtgggagccaattaatagtggttatggaaccaagttcgagtttcatacaaac |
170 |
Q |
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| T |
26772376 |
gagttgcataagtgtgatgtagaattgtgggagccgcttaatagtagttatggaaccaagtttgagtttcatacaaac |
26772453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 46769699 - 46769763
Alignment:
| Q |
71 |
atcattgaagcaaaatatgtttgagttacataagtgtcatgtgttatcgtgggagccaattaata |
135 |
Q |
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||||||| || |||||||||||||||| ||||||||| || || || |||||||||| |||||| |
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| T |
46769699 |
atcattggagtaaaatatgtttgagttgcataagtgtgatatgacattgtgggagccacttaata |
46769763 |
T |
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