View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_high_7 (Length: 603)

Name: NF3296_high_7
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_high_7
NF3296_high_7
[»] chr5 (10 HSPs)
chr5 (18-288)||(35779023-35779284)
chr5 (303-481)||(35779270-35779452)
chr5 (527-591)||(35779504-35779568)
chr5 (379-450)||(9049390-9049461)
chr5 (379-450)||(13239800-13239871)
chr5 (389-451)||(16137074-16137137)
chr5 (372-423)||(28277528-28277579)
chr5 (379-450)||(28278365-28278436)
chr5 (397-450)||(16135490-16135544)
chr5 (379-433)||(42310000-42310054)
[»] chr2 (5 HSPs)
chr2 (377-425)||(4561135-4561183)
chr2 (379-450)||(24398106-24398178)
chr2 (379-450)||(45726978-45727049)
chr2 (389-450)||(5723304-5723365)
chr2 (379-451)||(7815320-7815392)
[»] chr8 (4 HSPs)
chr8 (390-450)||(3073921-3073981)
chr8 (379-450)||(12702682-12702753)
chr8 (379-450)||(15212835-15212906)
chr8 (389-450)||(34254379-34254440)
[»] chr7 (4 HSPs)
chr7 (379-450)||(23555089-23555160)
chr7 (379-450)||(5116653-5116725)
chr7 (378-450)||(34310764-34310836)
chr7 (391-442)||(38280867-38280919)
[»] chr4 (6 HSPs)
chr4 (379-450)||(27417013-27417084)
chr4 (379-450)||(40632494-40632565)
chr4 (379-450)||(56178685-56178756)
chr4 (379-449)||(4588008-4588078)
chr4 (379-450)||(26699490-26699562)
chr4 (379-423)||(44570441-44570485)
[»] chr3 (3 HSPs)
chr3 (379-450)||(7762314-7762385)
chr3 (379-450)||(30236174-30236245)
chr3 (379-451)||(51398863-51398935)
[»] chr1 (3 HSPs)
chr1 (379-450)||(31659287-31659358)
chr1 (382-423)||(1050519-1050560)
chr1 (390-422)||(48260373-48260405)
[»] scaffold0219 (1 HSPs)
scaffold0219 (379-450)||(27490-27562)
[»] scaffold0053 (1 HSPs)
scaffold0053 (379-423)||(25102-25146)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 35779023 - 35779284
Alignment:
Q  18 atcaataatatatgtttggacgttgtgttaactaaaataaatgaacatggtcgaatatgccttgaaagctggttttcactcttggatgttggcttatgca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35779023 atcaataatatatttttggacgttgtgttaactaaaataaatgaacatggtcgaatatgccttgaaagctggttttcactcttggatgttgccttatgca 35779122  T
Q  118 cagagcgtatcgacccatgcgcaacgggcacacatgcgtttaatctataaattcatgttatcgacatagtttttggtgggaaaaattgggaattctaagg 217  Q
    | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35779123 cggagcgtatcgacccatgcacaacgggcacacatgcgtttaatatataaattcatgttatcgacatagtttttggtgggaaaaattgggaattctaagg 35779222  T
Q  218 ttacnnnnnnngagatattttagggttgaaaggttgaaagctcttgggaaaattatagggttagaaaacac 288  Q
    ||||       ||||||||||||        |||||||||||||||| |||||||||||||||||||||||    
T  35779223 ttac-aaaaaagagatattttag--------ggttgaaagctcttggaaaaattatagggttagaaaacac 35779284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 303 - 481
Target Start/End: Original strand, 35779270 - 35779452
Alignment:
Q  303 agggttagaaaacact----gaataaatcactgaatttcttcacaagaagaggtgcaaagagtaaacatacaagttgttattgttgaagataatttcttg 398  Q
    ||||||||||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35779270 agggttagaaaacactttgtgaataaatcattgaatttcttcacaagaagaggtgcaaagagtaaacatacaagttgttattgttgaagataatttcttg 35779369  T
Q  399 taacattttggtttctctttgtaaaaacttattgacaatgaattggagagattcctcttttgcgatgtggatcaaatttgggc 481  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35779370 taacattttggtttctctttgtaaaaatttattgacaatgaattggagagattcctcttttgcgatgtggatcaaatttgggc 35779452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 527 - 591
Target Start/End: Original strand, 35779504 - 35779568
Alignment:
Q  527 tattgtcatatttttctttattctcctttatcgtgtagttttgtcttcgcttgtttgatcacctt 591  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  35779504 tattgtcatatttttctttattctcctttatcgtgttgttttgtctttgcttgtttgatcacctt 35779568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 9049461 - 9049390
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||||| || |||||||||||    
T  9049461 ttgttgaagctaatttcttgtaaccattttgtatctctttgtaagaactcattgacagtggattggagagat 9049390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 13239800 - 13239871
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  13239800 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 13239871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 451
Target Start/End: Original strand, 16137074 - 16137137
Alignment:
Q  389 taatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagatt 451  Q
    |||||||||||||| |||||||||||||||| ||| |||| ||||| | |||||| ||||||||    
T  16137074 taatttcttgtaaccttttggtttctctttgaaaacaactcattgatagtgaatttgagagatt 16137137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 28277528 - 28277579
Alignment:
Q  372 gttgttattgttgaagataatttcttgtaacattttggtttctctttgtaaa 423  Q
    |||||||||||| | | ||||||||| |||||||||||||||||||| ||||    
T  28277528 gttgttattgttaaggttaatttcttataacattttggtttctctttctaaa 28277579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 28278365 - 28278436
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||   || || |||||||||||||||| ||||| | || |||||||||||    
T  28278365 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaaaaactcattgatagtggattggagagat 28278436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 16135490 - 16135544
Alignment:
Q  397 tgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 450  Q
    |||||| |||||||||||||||||||| |||| ||| | ||||||||||||||||    
T  16135490 tgtaaccttttggtttctctttgtaaataactcattcataatgaattggagagat 16135544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 433
Target Start/End: Complemental strand, 42310054 - 42310000
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattga 433  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| ||||||||||    
T  42310054 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaacttattga 42310000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 4561135 - 4561183
Alignment:
Q  377 tattgttgaagataatttcttgtaacattttggtttctctttgtaaaaa 425  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  4561135 tattgttgaagctaatttcttgtaacatttttgtatctctttgtaaaaa 4561183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 24398106 - 24398178
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||  ||| || |||||||||||| |||| ||||| |||| |||||||||||    
T  24398106 ttgttgaagctaatttcttgtaacccttttgtatctctttgtaaagaactcattgataatggattggagagat 24398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 45726978 - 45727049
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| |||||||||||||| | || || ||||||||||| |||| ||||| | || |||||||||||    
T  45726978 ttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 45727049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 5723365 - 5723304
Alignment:
Q  389 taatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    |||||||||||||| |||| || ||||||||||| |||| ||||| | || |||||||||||    
T  5723365 taatttcttgtaacctttttgtatctctttgtaagaactcattgatagtggattggagagat 5723304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 451
Target Start/End: Complemental strand, 7815392 - 7815320
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagatt 451  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||| | | || ||||||||||||    
T  7815392 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcatttatagtggattggagagatt 7815320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 3073981 - 3073921
Alignment:
Q  390 aatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    |||||||||||||||||| || ||||||||||| |||| ||||| ||||  ||||||||||    
T  3073981 aatttcttgtaacatttttgtatctctttgtaagaactcattgataatggcttggagagat 3073921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 12702753 - 12702682
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  12702753 ttgttgaagctaatttcttgtaacccttttgtgtctctttgtaagaactcattgatattggattggagagat 12702682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 15212835 - 15212906
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||   || || ||||||||||| |||| ||||| |||| |||||||||||    
T  15212835 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgataatggattggagagat 15212906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 34254440 - 34254379
Alignment:
Q  389 taatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||||||||  ||| || ||||||||||| |||||||||| | || |||||||||||    
T  34254440 taatttcttgtaacccttttgtatctctttgtaagaacttattgatagtggattggagagat 34254379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 23555089 - 23555160
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||| ||| ||  |||||||||| |||| ||||| | || |||||||||||    
T  23555089 ttgttgaagctaatttcttgtaacacttttgtacctctttgtaagaactcattgatagtggattggagagat 23555160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 5116653 - 5116725
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 450  Q
    |||||||||||||||| ||||||   ||| || |||||||||||| |||| ||||| | ||||||||||||||    
T  5116653 ttgttgaagataatttattgtaaaccttttgtatctctttgtaaagaactcattgatagtgaattggagagat 5116725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 450
Target Start/End: Complemental strand, 34310836 - 34310764
Alignment:
Q  378 attgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    |||||||||| |||||||||||||||  || || ||| ||||||| |||| ||||| | || |||||||||||    
T  34310836 attgttgaagctaatttcttgtaacacatttgtatctttttgtaagaactcattgatagtggattggagagat 34310764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 38280867 - 38280919
Alignment:
Q  391 atttcttgtaacattttggtttctctttgt-aaaaacttattgacaatgaatt 442  Q
    |||||||||||| ||||||||||||||||| || |||| ||||||||| ||||    
T  38280867 atttcttgtaactttttggtttctctttgtgaagaactcattgacaataaatt 38280919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 27417084 - 27417013
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||   || || |||||||||||||||| ||||| | || |||||||||||    
T  27417084 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaaaaactcattgatagtggattggagagat 27417013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 40632494 - 40632565
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| |||||||||||||| | || || ||||||||||| |||| ||||| | || |||||||||||    
T  40632494 ttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 40632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 56178756 - 56178685
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  56178756 ttgttgaagctaatttcttgtaacccttttgtatctctttgtaagaactcattgatagtggattggagagat 56178685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 4588008 - 4588078
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagaga 449  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || ||||||||||    
T  4588008 ttgttgaagctaatttcttgtaacccttttgtatctctttgtaagaactcattgatagtggattggagaga 4588078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 26699562 - 26699490
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||  ||| || |||||||||||| |||| ||| | |||| |||||||||||    
T  26699562 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaaagaactcatttataatggattggagagat 26699490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 44570485 - 44570441
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa 423  Q
    ||||||||  ||||||||||||||||||| || ||||||||||||    
T  44570485 ttgttgaaactaatttcttgtaacatttttgtatctctttgtaaa 44570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 7762314 - 7762385
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||  ||| || ||||||||||| |||| ||||| | || |||||||||||    
T  7762314 ttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 7762385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 30236174 - 30236245
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| |||||||||||||| | || || ||||||||||| |||| ||||| | || |||||||||||    
T  30236174 ttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 30236245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 51398863 - 51398935
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagatt 451  Q
    ||||||||| ||||||||||||||   || || ||||||||||| |||| ||||| | || ||||||||||||    
T  51398863 ttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagatt 51398935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 31659287 - 31659358
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaaaacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||   || || ||||||||||| |||||||||| | || |||||||||||    
T  31659287 ttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaacttattgatagtggattggagagat 31659358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 1050560 - 1050519
Alignment:
Q  382 ttgaagataatttcttgtaacattttggtttctctttgtaaa 423  Q
    |||||| ||||||||||||||||||| || ||||||||||||    
T  1050560 ttgaagctaatttcttgtaacatttttgtgtctctttgtaaa 1050519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 48260373 - 48260405
Alignment:
Q  390 aatttcttgtaacattttggtttctctttgtaa 422  Q
    ||||| |||||||||||||||||||||||||||    
T  48260373 aatttattgtaacattttggtttctctttgtaa 48260405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 27562 - 27490
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa-aacttattgacaatgaattggagagat 450  Q
    ||||||||| ||||||||||||||   || || |||||||||||| |||||||||| | || |||||||||||    
T  27562 ttgttgaagctaatttcttgtaactcatttgtatctctttgtaaataacttattgatagtggattggagagat 27490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 25102 - 25146
Alignment:
Q  379 ttgttgaagataatttcttgtaacattttggtttctctttgtaaa 423  Q
    ||||||||| |||||||||||||| |||| || ||||||||||||    
T  25102 ttgttgaaggtaatttcttgtaacctttttgtatctctttgtaaa 25146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University