View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_high_79 (Length: 232)
Name: NF3296_high_79
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 4824101 - 4823891
Alignment:
| Q |
2 |
gagatataaaacaaaagtagaaaattggcatataaagaatcttttttacttatttgtttgatnnnnnnntcatctcttttgaagtataaattgtaataca |
101 |
Q |
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| T |
4824101 |
gagatataaaacaaaagtagaaaattggcatataaagaatcttttttacttatttgtttgataaaaaaatcatattttttgaagtataaattgtaataca |
4824002 |
T |
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| Q |
102 |
aaaattagaatcaaaattaaacaacaaaatattcacaatataaagagttaattcgaagtattttgagtacaatcattcaagaagtaaatcctaaacaaag |
201 |
Q |
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| T |
4824001 |
aaaattagaatcaaaattaaacaacaaaatattcacaatataaagagttaattcgaagtattttgagtacaatcattcaagaagtaaatcctaaacaaag |
4823902 |
T |
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| Q |
202 |
tatgttgatta |
212 |
Q |
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||||||||||| |
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| T |
4823901 |
tatgttgatta |
4823891 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 41034127 - 41034181
Alignment:
| Q |
150 |
taattcgaagtattttgagtacaatcattcaagaagtaaatcctaaacaaagtat |
204 |
Q |
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|||||| ||||||||||||||| | |||||||||| |||||| |||||||||||| |
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| T |
41034127 |
taattcaaagtattttgagtactaccattcaagaaataaatcataaacaaagtat |
41034181 |
T |
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