View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_1 (Length: 3642)

Name: NF3296_low_1
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_1
NF3296_low_1
[»] chr4 (19 HSPs)
chr4 (2053-3246)||(9675909-9677098)
chr4 (1-814)||(9678483-9679303)
chr4 (934-1354)||(9677917-9678327)
chr4 (1366-1746)||(9677489-9677875)
chr4 (1711-2044)||(9677155-9677488)
chr4 (3271-3512)||(9675671-9675916)
chr4 (811-914)||(9678353-9678456)
chr4 (3569-3625)||(9675561-9675620)
chr4 (3521-3561)||(18513259-18513299)
chr4 (3521-3561)||(44796980-44797020)
chr4 (3526-3561)||(19230327-19230362)
chr4 (3521-3561)||(5654609-5654649)
chr4 (3521-3557)||(14465316-14465352)
chr4 (3521-3561)||(34589724-34589764)
chr4 (3521-3561)||(43299989-43300029)
chr4 (3521-3561)||(43300617-43300657)
chr4 (3526-3561)||(5176990-5177025)
chr4 (3526-3561)||(10546154-10546189)
chr4 (3521-3555)||(7012067-7012101)
[»] chr8 (10 HSPs)
chr8 (2668-2888)||(35804972-35805192)
chr8 (3520-3561)||(37225761-37225802)
chr8 (3521-3561)||(14227223-14227263)
chr8 (3526-3561)||(3508058-3508093)
chr8 (3521-3558)||(26466569-26466606)
chr8 (3521-3561)||(4611535-4611575)
chr8 (3521-3561)||(12985393-12985433)
chr8 (3521-3561)||(22770963-22771003)
chr8 (3528-3562)||(29447127-29447161)
chr8 (3527-3561)||(34201064-34201098)
[»] scaffold0022 (1 HSPs)
scaffold0022 (3521-3561)||(99894-99934)
[»] chr7 (4 HSPs)
chr7 (3521-3561)||(38134424-38134464)
chr7 (3521-3562)||(41360911-41360952)
chr7 (3521-3564)||(44020976-44021019)
chr7 (3526-3561)||(44172908-44172943)
[»] chr2 (10 HSPs)
chr2 (3521-3561)||(18570973-18571013)
chr2 (3521-3561)||(40681983-40682023)
chr2 (3527-3561)||(19613631-19613665)
chr2 (3527-3561)||(44605157-44605191)
chr2 (3521-3562)||(30563410-30563451)
chr2 (3525-3557)||(2073947-2073979)
chr2 (3521-3561)||(10535777-10535817)
chr2 (3521-3561)||(19573979-19574019)
chr2 (3526-3561)||(10250732-10250767)
chr2 (3523-3561)||(31026698-31026736)
[»] scaffold0024 (2 HSPs)
scaffold0024 (3521-3564)||(151415-151458)
scaffold0024 (3521-3561)||(18126-18166)
[»] chr5 (11 HSPs)
chr5 (3526-3561)||(18607115-18607150)
chr5 (3521-3560)||(28296329-28296368)
chr5 (3523-3561)||(11596473-11596511)
chr5 (3521-3562)||(9449470-9449511)
chr5 (3521-3553)||(21577134-21577166)
chr5 (3521-3561)||(32630753-32630793)
chr5 (3521-3561)||(38749581-38749621)
chr5 (3521-3561)||(43208292-43208332)
chr5 (3523-3558)||(19737503-19737538)
chr5 (2687-2777)||(28060438-28060528)
chr5 (3523-3561)||(30098329-30098367)
[»] chr3 (3 HSPs)
chr3 (3521-3558)||(37077359-37077396)
chr3 (3521-3561)||(16192768-16192808)
chr3 (3526-3561)||(52369781-52369816)
[»] chr1 (14 HSPs)
chr1 (3521-3562)||(42325561-42325602)
chr1 (3521-3561)||(6427351-6427391)
chr1 (3521-3561)||(17080899-17080939)
chr1 (3521-3561)||(17425111-17425151)
chr1 (3521-3561)||(24176385-24176425)
chr1 (3521-3561)||(26238130-26238170)
chr1 (3521-3561)||(40747791-40747831)
chr1 (3521-3561)||(43942325-43942365)
chr1 (3526-3561)||(11571591-11571626)
chr1 (3526-3561)||(43609836-43609871)
chr1 (3526-3557)||(48785286-48785317)
chr1 (3523-3557)||(1027864-1027898)
chr1 (3527-3561)||(3921674-3921708)
chr1 (3521-3559)||(11412788-11412826)
[»] chr6 (7 HSPs)
chr6 (3526-3562)||(2140498-2140534)
chr6 (3521-3561)||(30866162-30866202)
chr6 (3523-3561)||(9617437-9617475)
chr6 (3527-3557)||(15443702-15443732)
chr6 (3527-3561)||(29049892-29049926)
chr6 (3526-3560)||(32299281-32299315)
chr6 (3527-3557)||(33141265-33141295)
[»] scaffold0011 (1 HSPs)
scaffold0011 (3527-3561)||(240039-240073)


Alignment Details
Target: chr4 (Bit Score: 960; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 2053 - 3246
Target Start/End: Complemental strand, 9677098 - 9675909
Alignment:
Q  2053 tcaccagttcaaaagtaagcatccaaaacaaacatcaagttttgcaaggttagatgcatactgccgaacaacttgtccgatctagaagtgaacttcataa 2152  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9677098 tcaccagttcaaaagtaagcatccaaaacaaacatcaagttttgcacggttagatgcatactgccgaacaacttgtccgatctagaagtgaacttcataa 9676999  T
Q  2153 aatatggaggggttttcagtagcgagcgcaatgttaaaagctgcatccctcttatttcaaactacattaggataagtgttaacacattttattcgcattg 2252  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676998 aatatggaggggttttcagtagcgagcgcaatgttaaaagctgcacccctcttatttcaaactacattaggataagtgttaacacattttattcgcattg 9676899  T
Q  2253 gcagtaaaatttgtctcatgatttccatgtagtgtgcatgaatctcctgggca--aagtataacagcatatcaggttgtcatacacggttaacaacggca 2350  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  9676898 gcagtaaa-tttgtctcatgatttccatgtagtgtgcatgaatctcctgggcataaagtataacagcatatcaggttgtcatacacggttaacaacggca 9676800  T
Q  2351 aagatttctgtttttaactttc----------aacagaaatgtttcaacaagagcagaaggtgtaacagaaatgtttcatcttataccacttttacttct 2440  Q
    ||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9676799 aagatttctgtttttaactttcgacagaaaccaacagaaatgtttcaacaagagcagaaggtgtaacagaaatgtttcatcttataccacttttacttcc 9676700  T
Q  2441 aggaacaatcgataaacaaagctaatataaatcccttgttaaacttaaaagtaataacagattgtgccaaaagaacaagaacaaatacaatatcaaaggg 2540  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      ||||||||||    
T  9676699 acgagcaatcgataaacaaagctaatataaatcccttgttaaacttaaaagtaataacagattgtgccaaaagaacaaaaacaa------tatcaaaggg 9676606  T
Q  2541 attggtggatctagcaacagaaatctaagttcattaacagagtcaatgtatactaaaaagttcaaaaaatgaacccaacttcttgccttgcatcccttaa 2640  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676605 attggtgaatctagcaacagaaatctaagttcattaacagagtcaatgtatactaaaaagttcaaaaaatgaacccaacttcttgccttgcatcccttaa 9676506  T
Q  2641 gcctccctcaagtacagctttcccacgacatgaaggacggcaacaaaagctatgaagccaatgctcattacaagaacaacattaggtgagattttgagtc 2740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676505 gcctccctcaagtacagctttcccacgacatgaaggacggcaacaaaagctatgaagccaatgctcattacaagaacaacattaggtgagattttgagtc 9676406  T
Q  2741 caggggcatcgtcggtgtaaaattgaagcatagttccggctgctcctccagaggcgccaccacctgctgttttccttctcctcatgcttgcagtagctgc 2840  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676405 caggggcatcgtcggtgtaaaattgaagcatagttccggctgctcctccagaggcgccaccacctgctgttttccttctcctcatgcttgcagtagctgc 9676306  T
Q  2841 agcacttcctctttggggagctcctccacctaaagccattttctgaaatgaaaattcatacacttttaataccacaagacctaattcaaattaa-ttcca 2939  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9676305 agcacttcctctttggggagctcctccacctaaagccattttctgaaatgaaaattcatacacttttaataccacaagacctaattcaaattaacttcca 9676206  T
Q  2940 atttacaaaagtttctcatttaacaaaatcattatatacttacatacatttatacacaactgattgtaaatgattcgagaatatattgtttaaaggatac 3039  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  9676205 atttacaaaagtttctcatttaacaaaatcattatatacttacatacatttatacacaactgattgtaaatgattcgaga----attgtttaaaggatac 9676110  T
Q  3040 tcgtaaacaataataagatcaagatttatnnnnnnnnnnnnnnnnnnnnnntcaagtcttatcccagtaagtaaggtcggccacaagatcaaacgaaaac 3139  Q
    |||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||| || |||    
T  9676109 tcgtaaacaataataagatcaagatttat------acaacaacaacaacaatcaagtcttatcccagtaagtaaggtcggccacaagatcaaatgacaac 9676016  T
Q  3140 tattgttcaatcatataccatatgtctatccaaccgacaa--ttaaagacatattcgacagccctttaaaaagaaaaacta-atatttgaccatgattct 3236  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||   ||| |||||||| ||||||||||||||||||    
T  9676015 tattgttcaatcatataccatatgtctatccaaccgacaattttaaagacatattcgacagccatt---aaaaaaaaactacatatttgaccatgattct 9675919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 1 - 814
Target Start/End: Complemental strand, 9679303 - 9678483
Alignment:
Q  1 attgctatttccattttcttggacttgatagaaaatgtttggtgggtccaataaaccaaactacaacatcaacaacaaacttttgttagatacaaatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9679303 attgctatttccattttcttggacttgatagaaaatgtttggtgggtccaataaaccaaactacaacatcaacaacaaacttttgttagatacaaatatg 9679204  T
Q  101 agaaagttttaagtgcaagaaaaaataatgagggaggtgggggaggagacaaaaaggcggtaataccatgttttcaataatgcttgcagttgcgccacag 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  9679203 agaaagttttaagtgcaagaaaagataatgagggaggtgggggaggagacaaaaaggcggtactaccatgttttcaataatgcttgcagttgcgccacac 9679104  T
Q  201 ttgcgttgtgatctttaatattgtggaggattagtcgaaatgtgattaacgtagtcttaactacgttgactttgcgtagaaaaaacacacatttatatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  9679103 ttgcgttgtgatctttaatattgtggaggattagtcgaagtgtggttaacgtagtcttaactacgttgacattgcgtagaaaaaactcacatttatatgc 9679004  T
Q  301 gataaacaatattgactgttaatcttgagatcgaagattaccaaataacaaaatcagtttcaaacgatctttatcaacggttgagattgaaaactatgtg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  9679003 gataaacaatattgactgttaatcttgagatcgaagattaccaaataacaaaattagtttcaaacgatctttatcaatggttgagattgaaaactatgtg 9678904  T
Q  401 atgtagtactagtttaggaatagtggctgcagaaaggacacaaaatgggattagaattaacaaattaatcttaatggataatatatgaccaaaaagtgta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9678903 atgtagtactagtttaggaatagtggctgcagaaaggacacaaaatgggattagaattaacaaattaatcttaatggataatatatgaccaaaaagtgta 9678804  T
Q  501 gtaaaaaacaaacaaaggaatagattagacaggcaacaaccatgtgaggataaagaaagtaaacaaagtgaaacaacttgattaaactcacttttaactt 600  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9678803 gtaaaaaccaaacaaaggaatagattagacaggcaacaaccatgtgaggataaagaaagtaaacaaagtgaaccaacttgattaaactcacttttaactt 9678704  T
Q  601 tataaagttcagaatttcaaagcaagaatgaaattcattgcactcacaaagagaatctgaagttttgcaattataagtttagatgagacaatgtattag- 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9678703 tataaagttcagaatttcaaagcaagaatgaaattcattgcactcacaaagagaatctgaagttttgcaattataagtttagatgagacaatgtattaga 9678604  T
Q  700 ------aagtaaattgaataataagtttgtgaatgtgatttttgatggaagatgtaatagaattatataagaaaatgtgtaacaaaatgaaagcttacat 793  Q
          ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9678603 agttagaagtatattgaataataagtttgtgaatgtgatttatgatggaagatgtaatagaattatataagaaaatgtgtaacaaaatgaaagcttacat 9678504  T
Q  794 catatgaatcaaaatagtagt 814  Q
    |||||||||| ||||||||||    
T  9678503 catatgaatccaaatagtagt 9678483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 934 - 1354
Target Start/End: Complemental strand, 9678327 - 9677917
Alignment:
Q  934 tgagtgtgggggtgatgattgaagctttttacatttatgctttggttatggcctatgatgggaaatgctatgatgtacatgaggtggcatatggagtagt 1033  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9678327 tgagtgtgggggtgatgattgaagctttttacatttatgctttggttatggcctatgatgggaaatgctatgatgtgcatgaggtggcatatggagtagt 9678228  T
Q  1034 gttgaaccaatctttttcttttagacagtttttcagtgtgatgatgatattcaaactctttcttctatgtatattaaacaaagaatatatcattgttcan 1133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  9678227 gttgaaccaatctttttcttttagacagtttttcagtgtgatgatgatattcaaactctttcttctatgtatattaaacaaagaatatatcattgtttat 9678128  T
Q  1134 nnnnnngtcctcaaaattataacaatttaagattgtcaatcaattctgatgaatataaatatcaatagaaccataatcaaatttggcaaattttatggta 1233  Q
          |||||||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||| |||||||||||||    
T  9678127 ttttttgtcctcaaaattataacaatttaagattgtcaatc----------aaaataaatatcaatagaaccataatcaaatttggaaaattttatggta 9678038  T
Q  1234 gcataaataaaggtgatactagtacccatatgtctttattttttaatctcaatgctttaactgataaataaataaataattttattctgtgtagacataa 1333  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9678037 gtataaataaaggtgatactagtacccatatgtctttattttttcatctcaatgcttaaactgataaataaataaataattttattctgtgtagacataa 9677938  T
Q  1334 acttaccatttgtctcttatt 1354  Q
    |||||||||||||||||||||    
T  9677937 acttaccatttgtctcttatt 9677917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1366 - 1746
Target Start/End: Complemental strand, 9677875 - 9677489
Alignment:
Q  1366 tttctctactgtgatgcttattttgggcttagcaataggaaggaactctatactgttgaaagtgcagcagtggtatactgggaaccaaaca------aag 1459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||    
T  9677875 tttctctactgtgatgcttattttgggcttagcaataggaaggaactctataatgttgaaagtgcagcagtggtatactgggaaccaaactttcatcaag 9677776  T
Q  1460 cattagaatgtaaatcctaaactgttatgtattgcccaagaattcaactatgtgactcaatcccaatattagggatcaattttcacttccttcaacatca 1559  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9677775 cattagagtgtaaatcctaaactgttatgtattgcccaataattcaactatgtgactcaatcccaatattagggatcaattttcacttccttcaacatca 9677676  T
Q  1560 cttccgtctaaaaaatacatttataaacaaaatatgatatcctaaagtaaactttctataaaaatctgattgcttcacacttcgttgccccggtggattt 1659  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9677675 cttccgtctaaaaaatacatttataaacaaaatatgttatcctaaagtaaactttctataaaaatctgatcgcttcacacttcgttgccccggtggattt 9677576  T
Q  1660 ttagagtacacttggtagctagtcaaaatgaggatctaccttgagggtgtgactcttaattgttgatattgcttccgagttcggcta 1746  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9677575 ttagactacacttggtagctagtcaaactgaggatctaccttgagggtgtgactcttaactgttgatattgcttccgagttcggcta 9677489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1711 - 2044
Target Start/End: Complemental strand, 9677488 - 9677155
Alignment:
Q  1711 actcttaattgttgatattgcttccgagttcggctatactgcctcatggtcatactcgtattagctggaataatcacatattgtgcaaatagaacatttg 1810  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9677488 actcttaactgttgatattgcttccgagttcggctatactgcctcatggtcgtactcgtattagctggaataatcacatattgtgcaaatagaacatttg 9677389  T
Q  1811 tattattaatgagtttaaaacttacagtgaagtatcaagtaatgagagttatatctgcctgctatactcgtatagttttgtcttggtatgctagtgtttt 1910  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9677388 tattattaatgagtttgaaacttacagtgaagtatcaagtaatgagagttatatctgcctgctatactcgtatagttttgtcttggtatgctagtgtttt 9677289  T
Q  1911 tgtttatgtttaacctatgtcctagtgttgcagtgaattaaaatgtactttaaattcggtttaagaatttgtactatgcccccagtaacgaatttgacct 2010  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9677288 tgtttatgtttaacctatgtcctagtgttgcagtgaattaaaatgtactttaaattcggtttaagaatttgtactatgcccccagtaacgaatttgacct 9677189  T
Q  2011 gtcatatatgaatgaaatgtgaaatcgatgacag 2044  Q
    ||||||||||||||||||||||||||||||||||    
T  9677188 gtcatatatgaatgaaatgtgaaatcgatgacag 9677155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 3271 - 3512
Target Start/End: Complemental strand, 9675916 - 9675671
Alignment:
Q  3271 ataatatatcttatccacaagaatttctagtattcctgagaattgcattcaaaatgactttaacacacacaca----tgcaaatgcaataccttgtcaaa 3366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    |||||||||||||||||||||||    
T  9675916 ataatatatcttatccacaagaatttctagtattcctgagaattgcattcaaaatgacttcaacacacacacacacatgcaaatgcaataccttgtcaaa 9675817  T
Q  3367 atccaaatcattcaacagataaacaatttcagcttctcataacaatttgaaaacagtaaaatacaatgtaattcaaatgaaaaagatgacacaatcacat 3466  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9675816 atccaaatcattcaacagataaacaatttaagcttctcataacaatttgaaaacagtaaaatacaatgtaattcaaatgaaaaagttgacacaatcacat 9675717  T
Q  3467 aagccacaaacaattcatatcaagtgtttttggcagactcagacac 3512  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  9675716 aagccacaaacaattcatatcaagtgtttttggcagattcagacac 9675671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 9e-51
Query Start/End: Original strand, 811 - 914
Target Start/End: Complemental strand, 9678456 - 9678353
Alignment:
Q  811 tagtgatatggttccataactcttgtacttgaagttcttcaacctatttgttttcttcttcttctggttgtgacaaagagagtaaagtgaggaatttaaa 910  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9678456 tagtgatatggttccataactcttgtacttgaagttcttcaacctatttgttttcttcttcttctggttgtgacaaagagagtaaagtgaggaatttaaa 9678357  T
Q  911 ggtg 914  Q
    ||||    
T  9678356 ggtg 9678353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-16
Query Start/End: Original strand, 3569 - 3625
Target Start/End: Complemental strand, 9675620 - 9675561
Alignment:
Q  3569 gagtcgcgttcataagt---tgactcagtgacacacctaatccgaggagtattattaagt 3625  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  9675620 gagtcgcgttcataagtatctgactcagtgacacacctaatccgaggagtattattaagt 9675561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 18513299 - 18513259
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18513299 acaccgataataatttgagaaaatgacataattcaatgtaa 18513259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 44797020 - 44796980
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  44797020 acaccgacaataatttgagaaaataacataattcaatgtaa 44796980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Complemental strand, 19230362 - 19230327
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||||||||||||||||||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaa 19230327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 5654649 - 5654609
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  5654649 acactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3557
Target Start/End: Complemental strand, 14465352 - 14465316
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaat 3557  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14465352 acaccgataataatttgagaaaatgacataattcaat 14465316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 34589764 - 34589724
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  34589764 acaccgataacaatttgagaaaatgacataattcaatgtaa 34589724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 43300029 - 43299989
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  43300029 acacggataataatttgagaaaattacataattcaatgtaa 43299989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 43300617 - 43300657
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  43300617 acacggataataatttgagaaaattacataattcaatgtaa 43300657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Original strand, 5176990 - 5177025
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5176990 gataatattttgagaaaataacataattcaatgtaa 5177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Original strand, 10546154 - 10546189
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaa 10546189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3521 - 3555
Target Start/End: Original strand, 7012067 - 7012101
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattca 3555  Q
    |||||||||||||||||||||||| ||||||||||    
T  7012067 acaccgataataatttgagaaaatgacataattca 7012101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-53; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-53
Query Start/End: Original strand, 2668 - 2888
Target Start/End: Original strand, 35804972 - 35805192
Alignment:
Q  2668 acatgaaggacggcaacaaaagctatgaagccaatgctcattacaagaacaacattaggtgagattttgagtccaggggcatcgtcggtgtaaaattgaa 2767  Q
    |||||||||| ||||||||| ||||| |||||||||||||| |||||||| ||||| || || || ||||||||||||||||| || |||||||| ||||    
T  35804972 acatgaaggatggcaacaaatgctataaagccaatgctcatcacaagaaccacatttggggatatcttgagtccaggggcatcatcagtgtaaaactgaa 35805071  T
Q  2768 gcatagttccggctgctcctccagaggcgccaccacctgctgttttccttctcctcatgcttgcagtagctgcagcacttcctctttggggagctcctcc 2867  Q
    ||||||| || || ||||||||||| || || ||||| | ||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  35805072 gcatagtccctgcagctcctccagatgccccgccaccgggtgtcttccttcttctcatgcttgcagtcgctgctgcacttcctctttgaggagctgctcc 35805171  T
Q  2868 acctaaagccattttctgaaa 2888  Q
     ||| ||||||||||||||||    
T  35805172 gcctgaagccattttctgaaa 35805192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 3520 - 3561
Target Start/End: Complemental strand, 37225802 - 37225761
Alignment:
Q  3520 tacaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  37225802 tacaccaataataatttgagaaaataacataattcaatgtaa 37225761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 14227223 - 14227263
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  14227223 acaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Original strand, 3508058 - 3508093
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||||||||||||||||||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaa 3508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3521 - 3558
Target Start/End: Complemental strand, 26466606 - 26466569
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatg 3558  Q
    |||||||||||||||||||||||||| |||||||||||    
T  26466606 acaccgataataatttgagaaaataagataattcaatg 26466569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 4611535 - 4611575
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  4611535 acaccgctaataatttgagaaaataacataattcagtgtaa 4611575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 12985393 - 12985433
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  12985393 acacctataataatttgagaaaatcacataattcaatgtaa 12985433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 22770963 - 22771003
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  22770963 acaccgataataatttgataaaacaacataattcaatgtaa 22771003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3528 - 3562
Target Start/End: Complemental strand, 29447161 - 29447127
Alignment:
Q  3528 taataatttgagaaaataacataattcaatgtaac 3562  Q
    ||||||||||||||||| |||||||||||||||||    
T  29447161 taataatttgagaaaatcacataattcaatgtaac 29447127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3527 - 3561
Target Start/End: Complemental strand, 34201098 - 34201064
Alignment:
Q  3527 ataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||| ||||||||||||||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaa 34201064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 99894 - 99934
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  99894 acaccgataataattttagaaaataacataattcaatgtaa 99934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 38134464 - 38134424
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgtaa 38134424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3521 - 3562
Target Start/End: Original strand, 41360911 - 41360952
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaac 3562  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  41360911 acactgatattaatttgagaaaataacataattcaatgtaac 41360952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3521 - 3564
Target Start/End: Original strand, 44020976 - 44021019
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaacca 3564  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||    
T  44020976 acacggataataatttgaaaaaattacataattcaatgtaacca 44021019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Complemental strand, 44172943 - 44172908
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaa 44172908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 18570973 - 18571013
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaa 18571013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 40681983 - 40682023
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  40681983 acaccgataataatttgagaaaatgacataattcaatgtaa 40682023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 3527 - 3561
Target Start/End: Complemental strand, 19613665 - 19613631
Alignment:
Q  3527 ataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||||||||||||||    
T  19613665 ataataatttgagaaaataacataattcaatgtaa 19613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 3527 - 3561
Target Start/End: Complemental strand, 44605191 - 44605157
Alignment:
Q  3527 ataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||||||||||||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaa 44605157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3521 - 3562
Target Start/End: Original strand, 30563410 - 30563451
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaac 3562  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  30563410 acacggataataatttgagaaaatgacataattcaatgtaac 30563451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3525 - 3557
Target Start/End: Original strand, 2073947 - 2073979
Alignment:
Q  3525 cgataataatttgagaaaataacataattcaat 3557  Q
    |||||||||||||||||||||||||||||||||    
T  2073947 cgataataatttgagaaaataacataattcaat 2073979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 10535817 - 10535777
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  10535817 acaccgataataatttgagaaaatgacataattcagtgtaa 10535777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 19573979 - 19574019
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  19573979 acaccgataataatttaagaaaataacataattcagtgtaa 19574019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Original strand, 10250732 - 10250767
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10250732 gataataatttgagaaaataacacaattcaatgtaa 10250767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3523 - 3561
Target Start/End: Original strand, 31026698 - 31026736
Alignment:
Q  3523 accgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  31026698 accgataataatttaagaaaatgacataattcaatgtaa 31026736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 3521 - 3564
Target Start/End: Complemental strand, 151458 - 151415
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaacca 3564  Q
    |||||||||||||||||||||||||| |||||| ||||||||||    
T  151458 acaccgataataatttgagaaaataaaataattaaatgtaacca 151415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 18166 - 18126
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  18166 acaccgataaaattttgagaaaataacataattcaatgtaa 18126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Complemental strand, 18607150 - 18607115
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||||||||||||||||||||    
T  18607150 gataataatttgagaaaataacataattcaatgtaa 18607115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 3521 - 3560
Target Start/End: Original strand, 28296329 - 28296368
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgta 3560  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  28296329 acaccgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 3523 - 3561
Target Start/End: Complemental strand, 11596511 - 11596473
Alignment:
Q  3523 accgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  11596511 accgataataatttgagaaaatgacataattcaatgtaa 11596473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3521 - 3562
Target Start/End: Original strand, 9449470 - 9449511
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaac 3562  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  9449470 acaccaataataatttgagaaaatcacataattcaatgtaac 9449511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3553
Target Start/End: Complemental strand, 21577166 - 21577134
Alignment:
Q  3521 acaccgataataatttgagaaaataacataatt 3553  Q
    |||||||||||||||||||||||||||||||||    
T  21577166 acaccgataataatttgagaaaataacataatt 21577134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 32630793 - 32630753
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  32630793 acaccgataataatttgagaaaattatataattcaatgtaa 32630753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 38749621 - 38749581
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  38749621 acaccgataataatttgaaaaaatgacataattcaatgtaa 38749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 43208332 - 43208292
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaa 43208292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3523 - 3558
Target Start/End: Complemental strand, 19737538 - 19737503
Alignment:
Q  3523 accgataataatttgagaaaataacataattcaatg 3558  Q
    |||||||||||||||||||||| |||||||||||||    
T  19737538 accgataataatttgagaaaattacataattcaatg 19737503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 2687 - 2777
Target Start/End: Original strand, 28060438 - 28060528
Alignment:
Q  2687 aagctatgaagccaatgctcattacaagaacaacattaggtgagattttgagtccaggggcatcgtcggtgtaaaattgaagcatagttcc 2777  Q
    ||||||| || ||||| |||||  ||||||| ||| |||| |||||||||| |||| ||||| | |||  |||||| ||||||||||||||    
T  28060438 aagctataaaaccaatactcatggcaagaaccacaataggggagattttgaatccaagggcaccatcgacgtaaaagtgaagcatagttcc 28060528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3523 - 3561
Target Start/End: Original strand, 30098329 - 30098367
Alignment:
Q  3523 accgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  30098329 accgttaataatttgagaaaatcacataattcaatgtaa 30098367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3521 - 3558
Target Start/End: Original strand, 37077359 - 37077396
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatg 3558  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  37077359 acaccgataataatttgagaatataacataattcaatg 37077396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 16192808 - 16192768
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  16192808 acaccgttaataatttgagaaaataacataattcagtgtaa 16192768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Original strand, 52369781 - 52369816
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||| ||||||||||||||||    
T  52369781 gataataatttgagaaaattacataattcaatgtaa 52369816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3521 - 3562
Target Start/End: Original strand, 42325561 - 42325602
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaac 3562  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  42325561 acaccgataataatttgagaaaatgacataattcagtgtaac 42325602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 6427351 - 6427391
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaa 6427391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 17080939 - 17080899
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  17080939 acaccaataataatttgagaaaataacataattgaatgtaa 17080899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 17425151 - 17425111
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  17425151 acaccgataataatttgataaaatcacataattcaatgtaa 17425111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 24176425 - 24176385
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  24176425 acaccgataataatttgagaaaataacatcattcagtgtaa 24176385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 26238170 - 26238130
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  26238170 acaccgctaataatttgagaaaataacataattcagtgtaa 26238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 40747831 - 40747791
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  40747831 acacggataataatttgagaaaatgacataattcaatgtaa 40747791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Original strand, 43942325 - 43942365
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  43942325 acaccaataatgatttgagaaaataacataattcaatgtaa 43942365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Original strand, 11571591 - 11571626
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaa 11571626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3561
Target Start/End: Complemental strand, 43609871 - 43609836
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||||||||||| |||||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaa 43609836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000008
Query Start/End: Original strand, 3526 - 3557
Target Start/End: Complemental strand, 48785317 - 48785286
Alignment:
Q  3526 gataataatttgagaaaataacataattcaat 3557  Q
    ||||||||||||||||||||||||||||||||    
T  48785317 gataataatttgagaaaataacataattcaat 48785286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3523 - 3557
Target Start/End: Complemental strand, 1027898 - 1027864
Alignment:
Q  3523 accgataataatttgagaaaataacataattcaat 3557  Q
    |||||||||||||||||||||||||||||| ||||    
T  1027898 accgataataatttgagaaaataacataatgcaat 1027864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3527 - 3561
Target Start/End: Original strand, 3921674 - 3921708
Alignment:
Q  3527 ataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||| ||||||||||||||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaa 3921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3521 - 3559
Target Start/End: Complemental strand, 11412826 - 11412788
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgt 3559  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  11412826 acaccgataataatatgagaaaatgacataattcaatgt 11412788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3526 - 3562
Target Start/End: Complemental strand, 2140534 - 2140498
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgtaac 3562  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2140534 gataataatttgagaaaatgacataattcaatgtaac 2140498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 3521 - 3561
Target Start/End: Complemental strand, 30866202 - 30866162
Alignment:
Q  3521 acaccgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  30866202 acaccgctaataatttgagaaaatcacataattcaatgtaa 30866162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3523 - 3561
Target Start/End: Original strand, 9617437 - 9617475
Alignment:
Q  3523 accgataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  9617437 accggtaataatttgagaaaatcacataattcaatgtaa 9617475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3527 - 3557
Target Start/End: Original strand, 15443702 - 15443732
Alignment:
Q  3527 ataataatttgagaaaataacataattcaat 3557  Q
    |||||||||||||||||||||||||||||||    
T  15443702 ataataatttgagaaaataacataattcaat 15443732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3527 - 3561
Target Start/End: Original strand, 29049892 - 29049926
Alignment:
Q  3527 ataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||| ||||||||||||||||    
T  29049892 ataataatttgagaaaattacataattcaatgtaa 29049926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3526 - 3560
Target Start/End: Original strand, 32299281 - 32299315
Alignment:
Q  3526 gataataatttgagaaaataacataattcaatgta 3560  Q
    ||||||||||||||||||| |||||||||||||||    
T  32299281 gataataatttgagaaaatcacataattcaatgta 32299315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3527 - 3557
Target Start/End: Original strand, 33141265 - 33141295
Alignment:
Q  3527 ataataatttgagaaaataacataattcaat 3557  Q
    |||||||||||||||||||||||||||||||    
T  33141265 ataataatttgagaaaataacataattcaat 33141295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3527 - 3561
Target Start/End: Complemental strand, 240073 - 240039
Alignment:
Q  3527 ataataatttgagaaaataacataattcaatgtaa 3561  Q
    |||||||||||||||||||| ||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaa 240039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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