View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3296_low_11 (Length: 539)
Name: NF3296_low_11
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 9 - 518
Target Start/End: Original strand, 44672268 - 44672777
Alignment:
| Q |
9 |
gagatgaataaaaggttataatcaccccctgctttggcaggggatattgaactgtggggatttgtgatagaaaatacatgaagaaaacaagtttatatac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44672268 |
gagatgaataaaaggttataatcaccccctgctttggcaggggatattgaactgtggggatttgtgatagaaaatacatgaagaaaacaagtttatatac |
44672367 |
T |
|
| Q |
109 |
tataattgtacataaactttgagagaaccagctcagcattatattgatttaaggtgttggtttctgtggttgttgaatcttatatttagagaatttgttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44672368 |
tataattgtacataaactttgagagaaccagctcagcattatattgatttaaggtgttggtttctgtggttgttgaatcttatatttagagaatttgttg |
44672467 |
T |
|
| Q |
209 |
tttttattttaatcaattgtatgcaagaggcaaatggcacgtaaacatgtttgaattaccaaaataggtcgtcattgttataggcagtccataaaatgaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44672468 |
tttttattttaatcaattgtatgcaagaggcaaatggcacggaaacatgtttgaattaccaaaataggtcgtcattgttataggcagtccataaaatgaa |
44672567 |
T |
|
| Q |
309 |
attcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaacaaat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44672568 |
attcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaacaaat |
44672667 |
T |
|
| Q |
409 |
atagaatgtgtggggcgagctaacagtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgg |
508 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44672668 |
atagaatgtgcggggcgagctaacagtttaccgaagttcgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattgctaatatattgg |
44672767 |
T |
|
| Q |
509 |
gggttcgtgc |
518 |
Q |
| |
|
| |||||||| |
|
|
| T |
44672768 |
gcgttcgtgc |
44672777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 26401699 - 26401763
Alignment:
| Q |
433 |
agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattac |
497 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
26401699 |
agtttaccgaagtcagaaattttctacagtaggaatgtgccagatgcgttgaaaaacagtattac |
26401763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University