View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_14 (Length: 508)
Name: NF3296_low_14
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 4638673 - 4638590
Alignment:
| Q |
51 |
tccctcccactacctcattcatgtctttcatcacttgagtccggtacccttttctttctccacaacaggttctggtccggttcc |
134 |
Q |
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| T |
4638673 |
tccctcccactacctcattcatgtctttcatcacttgagtccggttcccttttctttctccacaacaggttctggtctggttcc |
4638590 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 4638518 - 4638456
Alignment:
| Q |
198 |
ctaaggttgtaattcatcttcttcctctggttcgtttgccattaattttcaaggtcagggttc |
260 |
Q |
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| T |
4638518 |
ctaaggttgtaattcatcttcttcctcaggttcgtttgccattaattttcaaggtcagggttc |
4638456 |
T |
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