View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3296_low_15 (Length: 506)
Name: NF3296_low_15
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_15 |
 | |
|
| [»] scaffold0163 (2 HSPs) |
| | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 16656874 - 16656458
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656874 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacaaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
16656775 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
219 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656774 |
aagttcgagtgctccacgtaccctcgaaacatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
16656675 |
T |
|
| Q |
220 |
cgtccgtccaccttccgcttagactgcgggggagtattagaatatgtctatattcattgtatatttgacttgtaaatattcattagc-----------aa |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
16656674 |
cgtccgtccacctcccgcttagactgcgggggagtattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattcattagcaa |
16656575 |
T |
|
| Q |
309 |
ttgattagtcatgaattatattgattagcaatcaattagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacag |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16656574 |
ttgattagtcataaattatattgattagcaatcaattagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacag |
16656475 |
T |
|
| Q |
409 |
tgaattatattcttaca |
425 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16656474 |
agaattatattcttaca |
16656458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 254 - 427
Target Start/End: Complemental strand, 16661213 - 16661029
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaatt-----------gattagtcatgaattatattgattagcaatca |
342 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
16661213 |
tattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattcattagcaattgattagtcataaattatattgattagcaatca |
16661114 |
T |
|
| Q |
343 |
attagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacagtgaattatattcttacatg |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
16661113 |
attagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacagagaattatattctgacatg |
16661029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 77 - 316
Target Start/End: Original strand, 18393335 - 18393570
Alignment:
| Q |
77 |
gagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaag |
176 |
Q |
| |
|
|||||||| || ||||| ||| ||||||| |||||||| ||||| ||||| || || ||||| ||||| ||| || |||||||||||||||||||||| | |
|
|
| T |
18393335 |
gagatggacatccattttgttagtgaaaaggtagctcgaggtcatgttcgcgttcttcacgttccctcaagatataaaattgcagatatctttaccaagg |
18393434 |
T |
|
| Q |
177 |
gacttccgcttatactttttcaagacttcagagacagtctcagcgtccgtccaccttccgcttagactgcgggggagtattagaatatgtctatattcat |
276 |
Q |
| |
|
| |||| | || ||||||||||| || ||||| || || ||||| | || |||| |||||| ||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
18393435 |
gtgttcccttaattctttttcaagatttgagagatagcctgagcgttcatcaacctcccgcttcaactacgggggagtattagaatatgtttatattcgt |
18393534 |
T |
|
| Q |
277 |
tgtatatttgacttgtaaatattcattagcaattgattag |
316 |
Q |
| |
|
|| ||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
18393535 |
tg----tttgacttgtaaatattgattagccattcattag |
18393570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 19336882 - 19336640
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||| ||||| ||||| || |||| || | |
|
|
| T |
19336882 |
gtcagtgcaatttatctctctggtaacccggtccaacatcaaagaacaaaacatattgagatggatattcattttgttcgcgaaaaggtgtctcgtggcc |
19336783 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
219 |
Q |
| |
|
|||| ||||| || |||||||| || || ||||||||||||| | || || ||||| ||||| | ||| | || ||||| ||| | ||||| ||||| |
|
|
| T |
19336782 |
aagtccgagttctgcacgtaccatcacgatatcaaattgcagacgttttcacaaaaggtcttcccttgatattattccaagatttccgtgacagcctcag |
19336683 |
T |
|
| Q |
220 |
cgtccgtccaccttccgcttagactgcgggggagtattagaat |
262 |
Q |
| |
|
| | ||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
19336682 |
cattcgtccacctcccgcttcgactgcgggggagtattagaat |
19336640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 45181837 - 45182000
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||| || || || || |||||||| ||||| |||||||| || ||||||||||| ||||| ||||| || | || |||||||| || || |||| |
|
|
| T |
45181837 |
gtcagtgcaatatatctatctggtaatcccgttcagcatcaacggaccaaacacattgaaatggacattcactttatccgcgaaaaagttgcccgtggtc |
45181936 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttcc |
183 |
Q |
| |
|
||||||| || || || || |||||| | |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
45181937 |
aagttcgtgttcttcatgtcccctcgcgttatcaaattgcggatatctttaccaaaggtcttcc |
45182000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 388
Target Start/End: Complemental strand, 4750754 - 4750620
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattgattagcaatcaattagtttcta |
353 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||| |||||||||||| |||| |||| | |||||||||| | ||| ||| | ||| |||||| |
|
|
| T |
4750754 |
tattagaatatgtatatatttattgtatgtttgacttgaaaatattcattataaattcattaactaggaattatattcactagtaattatttaatttcta |
4750655 |
T |
|
| Q |
354 |
gaatagaatcaacaatagttgtatattattcacaa |
388 |
Q |
| |
|
||||| || |||||| ||||||||||||||||| |
|
|
| T |
4750654 |
aaataggattgacaataattgtatattattcacaa |
4750620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 1853736 - 1853845
Alignment:
| Q |
35 |
ctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctcc |
134 |
Q |
| |
|
||||| || ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||| |||||||| ||||| || |||||||||| || | |
|
|
| T |
1853736 |
ctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcattttgttcgcgaaaaagttgctcgtggggaagttcgagtcctac |
1853835 |
T |
|
| Q |
135 |
acgtaccctc |
144 |
Q |
| |
|
|||| ||||| |
|
|
| T |
1853836 |
acgtcccctc |
1853845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 36650185 - 36650294
Alignment:
| Q |
35 |
ctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctcc |
134 |
Q |
| |
|
||||| || ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||| |||||||| ||||| || |||||||||| || | |
|
|
| T |
36650185 |
ctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcattttgttcgcgaaaaagttgctcgtggggaagttcgagtcctac |
36650284 |
T |
|
| Q |
135 |
acgtaccctc |
144 |
Q |
| |
|
|||| ||||| |
|
|
| T |
36650285 |
acgtcccctc |
36650294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 1677854 - 1677921
Alignment:
| Q |
50 |
gttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcgggg |
117 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
1677854 |
gttcaacatcaacgtacaaaacacatcgagatggacattcactttgtacgtgaaaaagtagctcgggg |
1677921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 4744020 - 4743964
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaatt |
310 |
Q |
| |
|
||||| ||||||| |||||| ||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
4744020 |
tattataatatgtatatatttattatatgtttgacttataaatattcattagcaatt |
4743964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 34948319 - 34948395
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatatt |
330 |
Q |
| |
|
||||| |||||||||||||| ||||||| || | |||||||||||||||| ||||| |||| ||| ||||||||| |
|
|
| T |
34948319 |
tattaaaatatgtctatatttattgtatgatttatttgtaaatattcattaacaattcattacccataaattatatt |
34948395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 18381858 - 18381905
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattag |
305 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
18381858 |
tattagaatatgtctatattcattg----tttgacttgtaaatattgattag |
18381905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 3955326 - 3955402
Alignment:
| Q |
53 |
caacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagt |
129 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||| ||||| || ||||| ||||| || || || ||||| ||||| |
|
|
| T |
3955326 |
caacatcaacgcaccaaacacatcgagatggatatacattttgtgcgtgagaaagtcgcccgtggccaagtacgagt |
3955402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 33287398 - 33287815
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33287398 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
33287497 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
219 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33287498 |
aagttcgagtgctccacgtactctcgaaacatcaaattgcagatatctttaccaaaggacttctgcttatactttttcaagacttcagagacagtctcaa |
33287597 |
T |
|
| Q |
220 |
cgtccgtccaccttccgcttagactgcgggggagtattagaatatgtctatattcattgtatatttgacttgtaaat-----------attcattagcaa |
308 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
33287598 |
cgtccgtccacctcccgcttagactgtgggggagtattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattcattagcaa |
33287697 |
T |
|
| Q |
309 |
ttgattagtcatgaattatattgattagcaatcaattagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacag |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33287698 |
ttgattagtcatgaattatattgattagcaatcaattagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaagacaa |
33287797 |
T |
|
| Q |
409 |
tgaattatattcttacat |
426 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33287798 |
ggaattatattcttacat |
33287815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 254 - 427
Target Start/End: Original strand, 33283030 - 33283203
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattgattagcaatcaattagtttcta |
353 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33283030 |
tattagaatatgtttatattcattgtatgtttgacttgtaaatattcattagcaattgattagtcatgaattatattcattagcaatcaattagtttcta |
33283129 |
T |
|
| Q |
354 |
gaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacagtgaattatattcttacatg |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
33283130 |
gaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaagacagagaattatattcttacatg |
33283203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 254 - 425
Target Start/End: Complemental strand, 33691933 - 33691763
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattgattagcaatcaattagtttcta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33691933 |
tattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagcaattgattagtcatgaattatattgattagcaatcaattagttttta |
33691834 |
T |
|
| Q |
354 |
gaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacagtgaattatattcttaca |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||| |
|
|
| T |
33691833 |
gaatagaatcaacaatagttgtatattattcacaattgatatccatgaaa-agagagaattatattcttaca |
33691763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 34013788 - 34014030
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||| ||||| ||||| || |||| || | |
|
|
| T |
34013788 |
gtcagtgcaatttatctctctggtaacccggtccaacatcaaagaacaaaacatattgagatggatattcattttgttcgcgaaaaggtgtctcgtggcc |
34013887 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
219 |
Q |
| |
|
|||| ||||| || |||||||| || || ||||||||||||| | || || ||||| ||||| | ||| | || ||||| ||| | ||||| ||||| |
|
|
| T |
34013888 |
aagtccgagttctgcacgtaccatcacgatatcaaattgcagacgttttcacaaaaggtcttcccttgatattattccaagatttccgtgacagcctcag |
34013987 |
T |
|
| Q |
220 |
cgtccgtccaccttccgcttagactgcgggggagtattagaat |
262 |
Q |
| |
|
| | ||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
34013988 |
cattcgtccacctcccgcttcgactgcgggggagtattagaat |
34014030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 4185818 - 4185585
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||| ||| | ||||| || |||| || | |
|
|
| T |
4185818 |
gtcagtgcaatttatctctctggtaacccggtccaacatcaaagaacaaaacatattgagatggatattcattttgtttgcgaaaaggtgtctcgtggcc |
4185719 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
219 |
Q |
| |
|
|||| |||| || |||||||| || || |||||||||||||| | || || ||||| ||||| | ||| | || ||||| || | ||||| ||||| |
|
|
| T |
4185718 |
aagtctgagttctgcacgtaccatcacgatatcaaattgcagatgttttcacaaaaggtcttcccttgatattattccaagattttcgtgacagcctcag |
4185619 |
T |
|
| Q |
220 |
cgtccgtccaccttccgcttagactgcgggggag |
253 |
Q |
| |
|
| | ||||||||| |||||| | ||||||||||| |
|
|
| T |
4185618 |
cattcgtccacctcccgcttcggctgcgggggag |
4185585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 48099617 - 48099526
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcg |
114 |
Q |
| |
|
||||| || ||||| || |||||||| || |||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| |||||||| |
|
|
| T |
48099617 |
agtgccatttacctttctggtaatccagtacaacatcagcgcactaaacatattgagatggacattcactttgttcgagaaaaggtagctcg |
48099526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 9843788 - 9843747
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatatt |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9843788 |
tattagaatatgtctatattcattg----tttgacttgtaaatatt |
9843747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 9854319 - 9854278
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatatt |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9854319 |
tattagaatatgtctatattcattg----tttgacttgtaaatatt |
9854278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 22949711 - 22949787
Alignment:
| Q |
53 |
caacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagt |
129 |
Q |
| |
|
||||||||| | || |||||||| ||||||||||| ||||| || ||||| ||||| ||||| || ||||| ||||| |
|
|
| T |
22949711 |
caacatcaatgcaccaaacacatcgagatggatatacattttgtgcgtgagaaagtcgctcgtggccaagtacgagt |
22949787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 31097 - 30682
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31097 |
gtcagtgctatctacctctcaggtaatccggttcaacatcaacgaatgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
30998 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
219 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30997 |
aagttcgagtgctccatgtaccctcgaaacatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagatagtctcag |
30898 |
T |
|
| Q |
220 |
cgtccgtccaccttccgcttagactgcgggggagtattagaatatgtctatattcattgtatatttgacttgtaaat-----------attcattagcaa |
308 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
30897 |
cgtccgtccacc-tccgcttagactgcgggggagtattagaatatgtctatattcattgtatgtttgacttgtaaatattcattagtaattcattagcaa |
30799 |
T |
|
| Q |
309 |
ttgattagtcatgaattatattgattagcaatcaattagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacag |
408 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30798 |
ttaattagtcatgaattatattaattagcaatcaattagtttctagaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaagacac |
30699 |
T |
|
| Q |
409 |
tgaattatattcttaca |
425 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
30698 |
aaacttatattcttaca |
30682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 254 - 427
Target Start/End: Complemental strand, 35506 - 35333
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattgattagcaatcaattagtttcta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35506 |
tattagaatatgtctatattcattgtatgtttgacttgtaaatattaattagcaattgtttagtcatgaattatattgattagcaatcaattagtttcta |
35407 |
T |
|
| Q |
354 |
gaatagaatcaacaatagttgtatattattcacaattgatatcaatgaaacacagtgaattatattcttacatg |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
35406 |
gaatagaatcaacaatagttgtatattattcataattgatatcaatgaaagacacaaaattatattcttacatg |
35333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 41 - 305
Target Start/End: Original strand, 28081534 - 28081793
Alignment:
| Q |
41 |
ggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtac |
140 |
Q |
| |
|
||||| || ||||| || |||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| || || ||||| | |
|
|
| T |
28081534 |
ggtaacccagttcagcaccaacgaacgaaacatattgagatggacatccattttgttcgtgaaaaggtagctcgaggtcatgttcgcgttcttcacgttc |
28081633 |
T |
|
| Q |
141 |
cctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagcgtccgtccaccttccgctta |
240 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||| || |||| | || ||||||||||| || ||||||| |||| ||| | || |||| |||||| |
|
|
| T |
28081634 |
cctcaagatatcaaattgcagttatctttaccaagggtcttctcttaattctttttcaagattttagagacaacctcaacgttcatcaacctcccgcttc |
28081733 |
T |
|
| Q |
241 |
gactgcgggggagtattagaatatgtctatattcattgtatatttgacttgtaaatattcattag |
305 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
28081734 |
aactgc-ggggagtattagaatatgtctatattcattg----tttgacttataaatattgattag |
28081793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 266
Target Start/End: Complemental strand, 26643733 - 26643518
Alignment:
| Q |
51 |
ttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtaccctcgagaaa |
150 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||||||| ||||||| ||||||||| ||||| || ||||| | || || || || ||||| || | |
|
|
| T |
26643733 |
ttcaacatcaacgcactaaacacatcgagatggatattcacttcgttcatgaaaaagtggctcgtggacaagtatgtgttctacatgtcccctcacgata |
26643634 |
T |
|
| Q |
151 |
tcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagcgtccgtccaccttccgcttagactgcgggg |
250 |
Q |
| |
|
|||||||| ||||| || | ||||| ||||| || |||| |||||||| || ||||||||||||||| | || ||| |||||| |||||||||| |
|
|
| T |
26643633 |
tcaaattgtcgatattttcgcgaaaggtcttcccctagtactatttcaagattttagagacagtctcagcatacgcgagcctcccgcttcgactgcgggg |
26643534 |
T |
|
| Q |
251 |
gagtattagaatatgt |
266 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
26643533 |
gtgtgatagaatatgt |
26643518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 266
Target Start/End: Complemental strand, 26749699 - 26749484
Alignment:
| Q |
51 |
ttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtaccctcgagaaa |
150 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||||||| ||||||| ||||||||| ||||| || ||||| | || || || || ||||| || | |
|
|
| T |
26749699 |
ttcaacatcaacgcactaaacacatcgagatggatattcacttcgttcatgaaaaagtggctcgtggacaagtatgtgttctacatgtcccctcacgata |
26749600 |
T |
|
| Q |
151 |
tcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagcgtccgtccaccttccgcttagactgcgggg |
250 |
Q |
| |
|
|||||||| ||||| || | ||||| ||||| || |||| |||||||| || ||||||||||||||| | || ||| |||||| |||||||||| |
|
|
| T |
26749599 |
tcaaattgtcgatattttcgcgaaaggtcttcccctagtactatttcaagattttagagacagtctcagcatacgcgagcctcccgcttcgactgcgggg |
26749500 |
T |
|
| Q |
251 |
gagtattagaatatgt |
266 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
26749499 |
gtgtgatagaatatgt |
26749484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 20654088 - 20654212
Alignment:
| Q |
41 |
ggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtac |
140 |
Q |
| |
|
||||| ||||| ||||||||| ||| ||||| |||||| ||||||||||||||||||| ||||| || ||||| || ||| | ||||| || ||||||| |
|
|
| T |
20654088 |
ggtaacccggtccaacatcaaaaaacaaaacatattgagttggatattcatttcgttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtac |
20654187 |
T |
|
| Q |
141 |
cctcgagaaatcaaattgcagatat |
165 |
Q |
| |
|
| || || |||||||||||||||| |
|
|
| T |
20654188 |
catcacgatatcaaattgcagatat |
20654212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 16594715 - 16594875
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaag |
122 |
Q |
| |
|
||||| ||||| || || |||||||| || || ||||| || || || || ||||||||||| |||||||| ||||| ||||| || ||||| || || | |
|
|
| T |
16594715 |
agtgccatctatctatctggtaatcctgtgcagcatcagcgcactaagcatattgagatggacattcattttgttcgggaaaaggtcgctcgtggccagg |
16594814 |
T |
|
| Q |
123 |
ttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttcc |
183 |
Q |
| |
|
||| || || || || ||||| ||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
16594815 |
ctcgcgtccttcatgttccctctagacatcaaattgcagacatcttcaccaaaggacttcc |
16594875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 33362442 - 33362369
Alignment:
| Q |
53 |
caacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcg |
126 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||| |
|
|
| T |
33362442 |
caacaccaacgcacaaaacacattgagatggatattcattttgtgcgagaaaaggttgctcgcggtcaagttcg |
33362369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 12038840 - 12038728
Alignment:
| Q |
53 |
caacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtaccctcgagaaatc |
152 |
Q |
| |
|
||||||||| |||| ||||| |||||| ||||||||||||||||||| ||||| || | ||| || ||| | ||||| || || ||||| || || ||| |
|
|
| T |
12038840 |
caacatcaaagaacaaaacatattgagttggatattcatttcgttcgcgaaaaggtggttcgtggccaaatccgagttctgcatgtaccatcacgatatc |
12038741 |
T |
|
| Q |
153 |
aaattgcagatat |
165 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12038740 |
aaattgcagatat |
12038728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 33166114 - 33166240
Alignment:
| Q |
57 |
atcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtaccctcgagaaatcaaat |
156 |
Q |
| |
|
||||||| || ||||||||||| ||||| || || || || || |||||||||||||| ||||| | || || ||||| || || || || |||| || |
|
|
| T |
33166114 |
atcaacgtaccaaacacattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcaggcacgtgtcctccatgttccatctcgacatcagat |
33166213 |
T |
|
| Q |
157 |
tgcagatatctttaccaaaggacttcc |
183 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
33166214 |
tgcagatatcttcaccaaagggcttcc |
33166240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 24333 - 24256
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcattagcaattgattagtcatgaattatattg |
331 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24333 |
tattagaatatgtctatattcatcgtatgtttgacttgtaaatattcattagcaattgattagtcatgaattatattg |
24256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 24202 - 24236
Alignment:
| Q |
301 |
attagcaattgattagtcatgaattatattgatta |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24202 |
attagcaattgattagtcatgaattatattgatta |
24236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 50 - 273
Target Start/End: Complemental strand, 7324433 - 7324210
Alignment:
| Q |
50 |
gttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtaccctcgagaa |
149 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| || || || || || ||||| || |
|
|
| T |
7324433 |
gttcaacatcaacgcactaaacacattgagatggacattcacttcgttcgtgaaaaagtggctcgtggacaagtacgtgttctacatgtcccctcacgat |
7324334 |
T |
|
| Q |
150 |
atcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagcgtccgtccaccttccgcttagactgcggg |
249 |
Q |
| |
|
|||||||||| ||||| || || ||||| ||||| || |||| |||||||| |||||||||||||||||| | | ||| |||||| ||||||||| |
|
|
| T |
7324333 |
atcaaattgccgatattttcacgaaaggccttcccctagtactatttcaagatttcagagacagtctcagcatacacgagcctcccgcttcgactgcggg |
7324234 |
T |
|
| Q |
250 |
ggagtattagaatatgtctatatt |
273 |
Q |
| |
|
|| || |||||||||| |||||| |
|
|
| T |
7324233 |
ggtgtgatagaatatgtgtatatt |
7324210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 16094884 - 16095094
Alignment:
| Q |
41 |
ggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtac |
140 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| |||||||| ||||| || || |||||||||||||||||||| || | || | | || || | |
|
|
| T |
16094884 |
ggtaatcatgttcaacatcaacgtacaaaacacatcgagatggacattcactttgtacgtgaaaaagtagctcggggacatatacgcatcttgcatgttc |
16094983 |
T |
|
| Q |
141 |
cctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagcgtccgtccaccttccgctta |
240 |
Q |
| |
|
||||| | |||||||||| ||||| |||||||| || ||||| || ||||| |||||||| ||| |||||||| | ||||| || | |||| |||||| |
|
|
| T |
16094984 |
cctcgcgctatcaaattgcggatatatttaccaagggtcttcccctaatactctttcaagatttccgagacagtttaagcgtacgccaacctcccgcttc |
16095083 |
T |
|
| Q |
241 |
gactgcggggg |
251 |
Q |
| |
|
|||||||||| |
|
|
| T |
16095084 |
aactgcggggg |
16095094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 19330072 - 19330169
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtca |
120 |
Q |
| |
|
|||||||||||||| || ||||||| || || |||| || || ||||||||||||||||| ||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
19330072 |
agtgctatctacctatctggtaatcttgtgcaggatcagcgtaccaaacacattgagatggacgttcattttgttcggaaaaaagtagctcgtggtca |
19330169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 30332462 - 30332519
Alignment:
| Q |
68 |
aaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttc |
125 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| || ||||| |||||||||| |
|
|
| T |
30332462 |
aaacacattgagatggatattcattttgtgcgagaaaaggttgctcgcggtcaagttc |
30332519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 45029839 - 45029999
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaag |
122 |
Q |
| |
|
||||| |||||||| || || || || || || |||||||| || ||||||||||| ||||| || || || || || |||||||||||||| ||||| | |
|
|
| T |
45029839 |
agtgccatctacctatctggcaaccctgtgcagcatcaacgtaccaaacacattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcagg |
45029938 |
T |
|
| Q |
123 |
ttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttcc |
183 |
Q |
| |
|
|| || ||||| || || || || |||| |||||||||||||| |||||||| ||||| |
|
|
| T |
45029939 |
cacgcgtcctccatgttccatctcgacatcagattgcagatatcttcaccaaagggcttcc |
45029999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 45034690 - 45034850
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaag |
122 |
Q |
| |
|
||||| |||||||| || || || || || || |||||||| || ||||||||||| ||||| || || || || || |||||||||||||| ||||| | |
|
|
| T |
45034690 |
agtgccatctacctatccggcaaccctgtgcagcatcaacgtaccaaacacattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcagg |
45034789 |
T |
|
| Q |
123 |
ttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttcc |
183 |
Q |
| |
|
|| || ||||| || || || || |||| |||||||||||||| |||||||| ||||| |
|
|
| T |
45034790 |
cacgcgtcctccatgttccatctcgacatcagattgcagatatcttcaccaaagggcttcc |
45034850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 9932335 - 9932244
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcg |
114 |
Q |
| |
|
||||| || ||||| || |||||||| || |||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| |||||||| |
|
|
| T |
9932335 |
agtgccatttacctttctggtaatccagtacaacatcagcgcactaaacatattgagatggacattcactttgttcgagaaaaggtagctcg |
9932244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 44387430 - 44387506
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcg |
99 |
Q |
| |
|
||||| |||||||| || |||||||| || || |||||||| || ||||| ||||||||||| ||||| || ||||| |
|
|
| T |
44387430 |
agtgccatctacctttctggtaatccagtgcagcatcaacgtactaaacatattgagatggacattcactttgttcg |
44387506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 52054108 - 52054044
Alignment:
| Q |
41 |
ggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaa |
105 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| ||||| |||||||| ||||| || |||||||| |
|
|
| T |
52054108 |
ggtaatcctattcaacatcaacgcacaaaacatattgaaatggatatccattttgtgcgtgaaaa |
52054044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 3378478 - 3378720
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||| || || ||||| ||| | ||||| ||||||||| |||| ||||| |||||||||||||||||||| ||||| ||||| || |||| || | |
|
|
| T |
3378478 |
gtcagtgcaatttatctctctggttacccggtccaacatcaaagaacaaaacatattgagatggatattcattttgttcgcgaaaaggtgtctcgtggcc |
3378577 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcag |
219 |
Q |
| |
|
|||| ||||| || |||||||| || || ||||||||||||| | || || ||||| ||||| | ||| | || ||||| ||| | ||||| |||| |
|
|
| T |
3378578 |
aagtccgagttctgcacgtaccatcacgatatcaaattgcagacgttttcacaaaaggtcttcccttgatattattccaagatttccgtgacagactcaa |
3378677 |
T |
|
| Q |
220 |
cgtccgtccaccttccgcttagactgcgggggagtattagaat |
262 |
Q |
| |
|
| | ||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
3378678 |
cattcgtccacctcccgcttcgactgcgggggagtattagaat |
3378720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 262
Target Start/End: Complemental strand, 38614295 - 38614068
Alignment:
| Q |
35 |
ctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctcc |
134 |
Q |
| |
|
||||| ||||| ||| | ||||||||| |||| ||||| ||||||||| |||||||||| ||||| ||||| || |||| || ||||| ||||| || | |
|
|
| T |
38614295 |
ctctctggtaacccgatccaacatcaaagaacaaaacatattgagatgaatattcattttgttcgcgaaaaggtgtctcgtggccaagtccgagttctgc |
38614196 |
T |
|
| Q |
135 |
acgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagcgtccgtccaccttc |
234 |
Q |
| |
|
||||||| || || ||||||||||||| | || || ||||| ||||| | ||| | || ||||| ||| | ||||| |||||| | ||||||||| | |
|
|
| T |
38614195 |
acgtaccatcacgatatcaaattgcagacgttttcacaaaaggtcttcctttgatattattccaagatttccgtgacagcctcagcattcgtccacctcc |
38614096 |
T |
|
| Q |
235 |
cgcttagactgcgggggagtattagaat |
262 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
38614095 |
cgcttcgactgcgggggagtattagaat |
38614068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 7231796 - 7231556
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaag |
122 |
Q |
| |
|
||||| || |||||||| ||||||| |||||||||||||| || || |||||||| || || ||||| || |||||||||||||| || || || |||| |
|
|
| T |
7231796 |
agtgcaatatacctctctggtaatcatgttcaacatcaacgcactaagcacattgaaatagacattcactttgttcgtgaaaaagttgcccgtggacaag |
7231697 |
T |
|
| Q |
123 |
ttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagcgt |
222 |
Q |
| |
|
| | || || || || || || | |||||||||| || ||||| |||||||| ||||||| ||||| ||| |||| ||| |||||||||||||||| |
|
|
| T |
7231696 |
tctgtgttcttcatgttccatctcgctatcaaattgccgacatcttcaccaaaggtcttccgcgcatactatttgaagatttccgagacagtctcagcgt |
7231597 |
T |
|
| Q |
223 |
ccgtccaccttccgcttagactgcgggggagtattagaata |
263 |
Q |
| |
|
|| | ||| |||||| ||||||||||| || |||||||| |
|
|
| T |
7231596 |
acgccggcctcccgcttcgactgcgggggtgtgttagaata |
7231556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 31343118 - 31343275
Alignment:
| Q |
20 |
gtcagtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtc |
119 |
Q |
| |
|
|||||||| || || || ||||||||||| || |||||||| || || ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
31343118 |
gtcagtgccatatatctatcgggtaatcctgtgcaacatcagcgtaccaaacatattgagatggacattcattttgttcgggaaaaagtagctcgtggtc |
31343217 |
T |
|
| Q |
120 |
aagttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaagg |
177 |
Q |
| |
|
||| | || || || || ||||| ||| |||| |||||||| ||||| |||||||| |
|
|
| T |
31343218 |
aagcatgtgtacttcatgttccctccagatatcagattgcagacatcttcaccaaagg |
31343275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 32307214 - 32307141
Alignment:
| Q |
53 |
caacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcg |
126 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||| |
|
|
| T |
32307214 |
caacaccaacgcacaaaacacattgagatggatattcattttgtgcgagaaaaggttgctcgcggtcaagttcg |
32307141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 19183455 - 19183552
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtca |
120 |
Q |
| |
|
||||| |||||||| || |||||||| || || |||| | || ||||||||| |||| || |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
19183455 |
agtgccatctacctatctggtaatcctgtgcagtatcagtgtaccaaacacattaagatagacattcattttgttcgggaaaaagtagctcgtggtca |
19183552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 40270591 - 40270431
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaag |
122 |
Q |
| |
|
||||| ||||| || || |||||||| || || ||||| || | ||||| ||||||||| | |||||||| ||||| ||||| || ||||| ||||| | |
|
|
| T |
40270591 |
agtgccatctatctatctggtaatcctgtgcagcatcagcgcattaaacatattgagatgaacattcattttgttcgggaaaaggtcgctcgtggtcagg |
40270492 |
T |
|
| Q |
123 |
ttcgagtgctccacgtaccctcgagaaatcaaattgcagatatctttaccaaaggacttcc |
183 |
Q |
| |
|
||| || || || || ||||| ||| |||| || || || ||||| |||||||||||||| |
|
|
| T |
40270491 |
ctcgcgtccttcatgttccctcaagacatcagatcgctgacatcttcaccaaaggacttcc |
40270431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 28552889 - 28553059
Alignment:
| Q |
50 |
gttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctccacgtaccctcgagaa |
149 |
Q |
| |
|
|||||| ||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||| || || || || || |||| || |
|
|
| T |
28552889 |
gttcaatatcaacgcactaaacacatcgagatggatattcacttcgttcgtgaaaaagtggctcgtggacaagtacgtgttctacatgtcacctcacgat |
28552988 |
T |
|
| Q |
150 |
atcaaattgcagatatctttaccaaaggacttccgcttatactttttcaagacttcagagacagtctcagc |
220 |
Q |
| |
|
||||||||| ||||| || || ||||| ||||| || |||| |||||||| ||||| |||| ||||||| |
|
|
| T |
28552989 |
atcaaattgtcgatattttcacgaaaggtcttcccctagtactctttcaagatttcagggacaatctcagc |
28553059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 28560856 - 28560929
Alignment:
| Q |
50 |
gttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagt |
123 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||| |
|
|
| T |
28560856 |
gttcaacatcaacgcagtaaacacatcgagatggatattcacttcgttcgtgaaaaagtggctcgtggacaagt |
28560929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 22269 - 22378
Alignment:
| Q |
35 |
ctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctcc |
134 |
Q |
| |
|
||||| || ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||| |||||||| ||||| || |||||||||| || | |
|
|
| T |
22269 |
ctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcattttgttcgcgaaaaagttgctcgtggggaagttcgagtcctac |
22368 |
T |
|
| Q |
135 |
acgtaccctc |
144 |
Q |
| |
|
|||| ||||| |
|
|
| T |
22369 |
acgtcccctc |
22378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 7084847 - 7084956
Alignment:
| Q |
35 |
ctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttcgagtgctcc |
134 |
Q |
| |
|
||||| || ||||||||||||||||| || || ||||| || |||||||||||||||| ||||| |||||||| ||||| || |||||||||| || | |
|
|
| T |
7084847 |
ctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcattctgttcgcgaaaaagttgctcgtggggaagttcgagtcctac |
7084946 |
T |
|
| Q |
135 |
acgtaccctc |
144 |
Q |
| |
|
|||| ||||| |
|
|
| T |
7084947 |
acgtcccctc |
7084956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 13116106 - 13116154
Alignment:
| Q |
254 |
tattagaatatgtctatattcattgtatatttgacttgtaaatattcat |
302 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13116106 |
tattataatatgtttatattcattgtatatttgacttgtaaatattcat |
13116154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 32447852 - 32447913
Alignment:
| Q |
203 |
ttcagagacagtctcagcgtccgtccaccttccgcttagactgcgggggagtattagaatat |
264 |
Q |
| |
|
|||||||| ||||||| | |||||| |||| ||| || |||| ||||||||||||||||||| |
|
|
| T |
32447852 |
ttcagagatagtctcaacatccgtcaacctcccgtttcgactacgggggagtattagaatat |
32447913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 33304457 - 33304376
Alignment:
| Q |
44 |
aatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtcaagttc |
125 |
Q |
| |
|
||||| |||||||||||||| || ||| ||||||||| ||||||||| || || ||||| ||||| |||| |||| ||||| |
|
|
| T |
33304457 |
aatcccgttcaacatcaacgcaccaaaaacattgagagggatattcactttgtgcgtgagaaagttactcgtggtccagttc |
33304376 |
T |
|
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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 31948 - 32045
Alignment:
| Q |
23 |
agtgctatctacctctcgggtaatccggttcaacatcaacgaacgaaacacattgagatggatattcatttcgttcgtgaaaaagtagctcggggtca |
120 |
Q |
| |
|
||||| ||||| || || |||||||| || || ||||| || || ||||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| |
|
|
| T |
31948 |
agtgccatctatctatctggtaatcctgtgcagcatcagcgcacaaaacatattgagatggacattcattttgttcgggaaaaggttgctcgtggtca |
32045 |
T |
|
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