View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_16 (Length: 504)

Name: NF3296_low_16
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_16
NF3296_low_16
[»] chr2 (47 HSPs)
chr2 (1-147)||(31013805-31013951)
chr2 (259-388)||(31013562-31013691)
chr2 (393-489)||(16514414-16514512)
chr2 (393-489)||(29508741-29508839)
chr2 (401-465)||(6217222-6217286)
chr2 (393-472)||(9173050-9173129)
chr2 (417-489)||(15011294-15011368)
chr2 (393-489)||(6217274-6217363)
chr2 (400-465)||(6722027-6722092)
chr2 (400-465)||(16514500-16514565)
chr2 (31-108)||(31526407-31526483)
chr2 (400-465)||(38933663-38933728)
chr2 (429-486)||(29925623-29925682)
chr2 (400-465)||(29508687-29508753)
chr2 (400-465)||(37961782-37961847)
chr2 (405-465)||(14229355-14229415)
chr2 (400-451)||(14470589-14470640)
chr2 (400-459)||(32545870-32545929)
chr2 (429-489)||(38933613-38933675)
chr2 (407-465)||(33018621-33018679)
chr2 (417-487)||(14470644-14470716)
chr2 (393-437)||(37632981-37633025)
chr2 (392-489)||(37961704-37961794)
chr2 (417-489)||(6721965-6722039)
chr2 (400-487)||(24115917-24116006)
chr2 (402-451)||(14892350-14892399)
chr2 (400-449)||(45213892-45213941)
chr2 (429-489)||(2828610-2828672)
chr2 (429-489)||(2893989-2894051)
chr2 (397-431)||(9172984-9173018)
chr2 (269-331)||(17560834-17560896)
chr2 (259-333)||(32648154-32648228)
chr2 (431-489)||(14229403-14229462)
chr2 (400-465)||(24115996-24116061)
chr2 (400-457)||(32545783-32545840)
chr2 (421-487)||(37762053-37762121)
chr2 (259-340)||(40800184-40800265)
chr2 (394-430)||(29925672-29925708)
chr2 (393-429)||(38933586-38933622)
chr2 (400-456)||(39819060-39819116)
chr2 (348-389)||(12634848-12634889)
chr2 (397-430)||(15011382-15011415)
chr2 (399-456)||(30610261-30610317)
chr2 (393-429)||(1992235-1992271)
chr2 (357-389)||(12127720-12127752)
chr2 (413-465)||(29925580-29925632)
chr2 (357-389)||(45714997-45715029)
[»] chr5 (39 HSPs)
chr5 (393-489)||(19655148-19655246)
chr5 (391-489)||(291085-291185)
chr5 (393-486)||(19598322-19598417)
chr5 (417-489)||(29699381-29699455)
chr5 (400-465)||(2953266-2953331)
chr5 (392-476)||(30117893-30117977)
chr5 (400-465)||(16971220-16971285)
chr5 (400-465)||(29699443-29699508)
chr5 (400-489)||(16439135-16439226)
chr5 (394-489)||(3899839-3899927)
chr5 (400-465)||(291173-291238)
chr5 (400-465)||(3899915-3899980)
chr5 (400-486)||(12913800-12913888)
chr5 (400-465)||(19655234-19655299)
chr5 (400-489)||(3180110-3180200)
chr5 (429-489)||(16971170-16971232)
chr5 (402-462)||(30117827-30117887)
chr5 (400-467)||(1638454-1638521)
chr5 (400-465)||(2093934-2093999)
chr5 (400-448)||(2356364-2356412)
chr5 (397-465)||(12913879-12913947)
chr5 (402-465)||(28818993-28819056)
chr5 (393-431)||(2953197-2953235)
chr5 (402-489)||(39031201-39031290)
chr5 (402-438)||(39777050-39777086)
chr5 (400-459)||(13312261-13312320)
chr5 (429-489)||(16802470-16802532)
chr5 (400-459)||(32485631-32485690)
chr5 (435-489)||(38134423-38134479)
chr5 (402-450)||(22082997-22083045)
chr5 (400-489)||(28818923-28819005)
chr5 (400-456)||(29385390-29385446)
chr5 (400-463)||(11983253-11983315)
chr5 (400-458)||(26662482-26662541)
chr5 (400-458)||(26934077-26934136)
chr5 (427-489)||(2356298-2356360)
chr5 (406-458)||(31147140-31147193)
chr5 (402-450)||(19272265-19272313)
chr5 (400-428)||(19598435-19598463)
[»] chr3 (37 HSPs)
chr3 (393-489)||(41752954-41753052)
chr3 (393-486)||(43139762-43139857)
chr3 (393-489)||(51046123-51046221)
chr3 (393-489)||(47492097-47492195)
chr3 (400-465)||(1801443-1801508)
chr3 (400-489)||(30734452-30734543)
chr3 (400-465)||(41753040-41753105)
chr3 (400-489)||(33689173-33689264)
chr3 (429-489)||(1801496-1801558)
chr3 (409-483)||(39057015-39057089)
chr3 (400-476)||(18321648-18321724)
chr3 (392-470)||(1801566-1801635)
chr3 (400-465)||(45103106-45103171)
chr3 (407-481)||(30580814-30580890)
chr3 (407-485)||(50524706-50524786)
chr3 (417-465)||(47492061-47492109)
chr3 (429-489)||(47677305-47677367)
chr3 (430-489)||(30476524-30476585)
chr3 (400-465)||(30580753-30580818)
chr3 (400-465)||(30734399-30734464)
chr3 (397-474)||(50549969-50550046)
chr3 (400-489)||(55223229-55223320)
chr3 (429-489)||(29031764-29031826)
chr3 (400-451)||(50524792-50524843)
chr3 (402-465)||(51046072-51046135)
chr3 (400-450)||(39429996-39430046)
chr3 (400-433)||(1272557-1272590)
chr3 (266-330)||(5528332-5528396)
chr3 (271-330)||(25410372-25410431)
chr3 (400-435)||(35538960-35538995)
chr3 (347-381)||(27158282-27158316)
chr3 (400-430)||(49414525-49414555)
chr3 (429-474)||(39385755-39385800)
chr3 (401-457)||(7977584-7977640)
chr3 (357-389)||(8122971-8123003)
chr3 (429-465)||(30476500-30476536)
chr3 (429-465)||(33689252-33689288)
[»] chr7 (33 HSPs)
chr7 (393-489)||(34854745-34854843)
chr7 (393-489)||(11016859-11016957)
chr7 (393-489)||(38975795-38975893)
chr7 (393-487)||(41018280-41018376)
chr7 (393-489)||(15027532-15027630)
chr7 (395-474)||(45231917-45231996)
chr7 (395-489)||(4290537-4290633)
chr7 (400-465)||(11016945-11017010)
chr7 (393-465)||(48000684-48000756)
chr7 (393-487)||(29053366-29053453)
chr7 (400-465)||(48000813-48000878)
chr7 (429-489)||(7671961-7672023)
chr7 (405-489)||(27028843-27028929)
chr7 (400-458)||(4290628-4290686)
chr7 (400-465)||(42628371-42628436)
chr7 (421-486)||(22764753-22764820)
chr7 (400-470)||(27028725-27028795)
chr7 (435-474)||(48000769-48000808)
chr7 (406-489)||(30217504-30217588)
chr7 (400-465)||(38975881-38975946)
chr7 (429-487)||(42628321-42628381)
chr7 (427-465)||(34854719-34854757)
chr7 (429-474)||(4649346-4649391)
chr7 (400-465)||(41945931-41945996)
chr7 (407-488)||(41945859-41945942)
chr7 (422-465)||(15027618-15027661)
chr7 (427-465)||(29053338-29053376)
chr7 (402-431)||(4649328-4649357)
chr7 (400-429)||(45231860-45231889)
chr7 (429-465)||(7671937-7671973)
chr7 (357-389)||(21161243-21161275)
chr7 (357-389)||(26762968-26763000)
chr7 (357-389)||(27803370-27803402)
[»] chr1 (55 HSPs)
chr1 (393-489)||(29179647-29179745)
chr1 (393-489)||(48993967-48994065)
chr1 (392-489)||(44706834-44706933)
chr1 (393-467)||(46931987-46932061)
chr1 (393-489)||(5995359-5995457)
chr1 (393-489)||(37155036-37155134)
chr1 (393-485)||(48498405-48498499)
chr1 (399-489)||(36290457-36290549)
chr1 (400-489)||(1091594-1091685)
chr1 (400-489)||(9157307-9157398)
chr1 (400-489)||(32540798-32540889)
chr1 (393-488)||(49444964-49445050)
chr1 (400-474)||(21630039-21630113)
chr1 (400-465)||(5995445-5995510)
chr1 (400-465)||(48993914-48993979)
chr1 (400-489)||(4608993-4609084)
chr1 (400-489)||(17127614-17127705)
chr1 (402-474)||(28395636-28395708)
chr1 (31-108)||(32991623-32991699)
chr1 (400-461)||(46932062-46932122)
chr1 (393-489)||(8337901-8337990)
chr1 (402-465)||(15220887-15220950)
chr1 (429-489)||(29371394-29371456)
chr1 (400-465)||(29179594-29179659)
chr1 (429-489)||(38674555-38674615)
chr1 (410-465)||(32540755-32540810)
chr1 (410-486)||(45728294-45728372)
chr1 (400-465)||(49444910-49444975)
chr1 (400-451)||(31342260-31342311)
chr1 (429-489)||(34062235-34062297)
chr1 (394-489)||(46333996-46334084)
chr1 (400-465)||(17127561-17127626)
chr1 (400-465)||(29371444-29371509)
chr1 (400-465)||(33219649-33219714)
chr1 (400-488)||(19711231-19711319)
chr1 (429-489)||(741552-741614)
chr1 (259-330)||(6087557-6087628)
chr1 (393-430)||(34062208-34062245)
chr1 (260-332)||(3463620-3463692)
chr1 (429-486)||(5694942-5695001)
chr1 (409-489)||(2573205-2573277)
chr1 (400-451)||(12441045-12441096)
chr1 (429-489)||(15220837-15220899)
chr1 (415-450)||(33734213-33734248)
chr1 (400-451)||(36381589-36381640)
chr1 (429-489)||(47303421-47303483)
chr1 (427-465)||(8337875-8337913)
chr1 (400-430)||(48823891-48823921)
chr1 (393-430)||(38674504-38674541)
chr1 (456-489)||(47303640-47303673)
chr1 (399-431)||(4609097-4609129)
chr1 (400-456)||(9884838-9884894)
chr1 (357-389)||(26977742-26977774)
chr1 (429-465)||(34062285-34062321)
chr1 (429-465)||(47303471-47303507)
[»] chr8 (27 HSPs)
chr8 (394-489)||(35441019-35441116)
chr8 (393-489)||(5033151-5033249)
chr8 (393-489)||(8243438-8243536)
chr8 (393-489)||(33841641-33841739)
chr8 (393-473)||(2581815-2581895)
chr8 (394-489)||(10086748-10086845)
chr8 (393-466)||(22649835-22649908)
chr8 (400-486)||(5667094-5667182)
chr8 (396-489)||(45191177-45191272)
chr8 (402-485)||(43844525-43844608)
chr8 (400-465)||(5033237-5033302)
chr8 (400-489)||(8796419-8796510)
chr8 (407-465)||(10086833-10086891)
chr8 (400-465)||(33841588-33841653)
chr8 (400-465)||(35440966-35441031)
chr8 (393-465)||(5667173-5667245)
chr8 (400-489)||(34229638-34229729)
chr8 (429-486)||(39850981-39851040)
chr8 (400-489)||(4958597-4958687)
chr8 (400-459)||(45191124-45191183)
chr8 (400-450)||(39851046-39851096)
chr8 (400-451)||(1880236-1880286)
chr8 (429-489)||(6296631-6296693)
chr8 (406-465)||(8796498-8796557)
chr8 (430-489)||(34541853-34541914)
chr8 (357-386)||(17927761-17927790)
chr8 (426-458)||(37618750-37618782)
[»] chr4 (46 HSPs)
chr4 (394-489)||(51265436-51265533)
chr4 (393-489)||(6271692-6271790)
chr4 (393-489)||(23444319-23444417)
chr4 (395-489)||(30861824-30861920)
chr4 (400-489)||(26186066-26186155)
chr4 (400-468)||(3862619-3862687)
chr4 (400-468)||(3871376-3871444)
chr4 (417-489)||(47661856-47661930)
chr4 (400-489)||(35682163-35682254)
chr4 (402-465)||(47661918-47661981)
chr4 (400-465)||(6271778-6271843)
chr4 (427-489)||(40789203-40789267)
chr4 (400-465)||(42375086-42375151)
chr4 (402-465)||(23444268-23444331)
chr4 (400-451)||(30709990-30710041)
chr4 (393-489)||(42375009-42375098)
chr4 (393-489)||(47404635-47404724)
chr4 (402-489)||(47762607-47762696)
chr4 (31-108)||(3513089-3513165)
chr4 (400-465)||(51265521-51265586)
chr4 (406-465)||(53954686-53954745)
chr4 (400-474)||(44379927-44380001)
chr4 (406-465)||(35682242-35682301)
chr4 (429-489)||(52028575-52028637)
chr4 (429-489)||(53954636-53954698)
chr4 (400-457)||(5048884-5048941)
chr4 (393-430)||(31430560-31430597)
chr4 (402-451)||(44380020-44380069)
chr4 (259-340)||(53402551-53402632)
chr4 (397-465)||(38714899-38714967)
chr4 (260-330)||(13119487-13119557)
chr4 (430-489)||(55090046-55090107)
chr4 (421-474)||(31532756-31532809)
chr4 (417-465)||(25818387-25818435)
chr4 (400-451)||(2325070-2325121)
chr4 (421-452)||(30861800-30861831)
chr4 (400-431)||(47404591-47404622)
chr4 (400-430)||(50384111-50384141)
chr4 (400-429)||(24006165-24006194)
chr4 (400-437)||(25617978-25618015)
chr4 (400-429)||(31430467-31430496)
chr4 (348-385)||(53618794-53618831)
chr4 (429-465)||(24006096-24006132)
chr4 (400-456)||(31846896-31846952)
chr4 (429-465)||(50384131-50384167)
chr4 (429-465)||(52028625-52028661)
[»] scaffold0161 (2 HSPs)
scaffold0161 (393-474)||(27287-27368)
scaffold0161 (400-451)||(27217-27268)
[»] chr6 (17 HSPs)
chr6 (393-489)||(551215-551313)
chr6 (393-465)||(24975742-24975814)
chr6 (400-489)||(24587458-24587549)
chr6 (400-489)||(17750900-17750990)
chr6 (391-489)||(12343097-12343188)
chr6 (409-465)||(12343176-12343232)
chr6 (400-465)||(17750978-17751043)
chr6 (402-465)||(13043533-13043596)
chr6 (400-451)||(24618598-24618649)
chr6 (400-465)||(7384485-7384550)
chr6 (429-474)||(31654331-31654376)
chr6 (393-489)||(13043438-13043545)
chr6 (429-465)||(551191-551227)
chr6 (430-489)||(10521899-10521960)
chr6 (272-330)||(11714243-11714301)
chr6 (429-474)||(24618668-24618713)
chr6 (427-459)||(10521873-10521905)
[»] scaffold0586 (2 HSPs)
scaffold0586 (400-489)||(7097-7187)
scaffold0586 (406-465)||(7050-7109)
[»] scaffold0047 (2 HSPs)
scaffold0047 (395-489)||(63758-63845)
scaffold0047 (429-465)||(63833-63869)
[»] scaffold0016 (2 HSPs)
scaffold0016 (400-465)||(49700-49765)
scaffold0016 (429-489)||(49753-49815)
[»] scaffold0180 (1 HSPs)
scaffold0180 (406-465)||(19125-19184)
[»] scaffold0481 (1 HSPs)
scaffold0481 (402-443)||(2974-3015)
[»] scaffold0022 (1 HSPs)
scaffold0022 (348-389)||(69272-69313)
[»] scaffold0103 (1 HSPs)
scaffold0103 (356-389)||(40798-40831)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 31013951 - 31013805
Alignment:
Q  1 aagaaataggaatgaaatatgggtattctctcttctcttgtttggtgtgatagagagtgagaagagagaaatgtacttatttatgaaaaggataaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  31013951 aagaaataggaatgaaatatgggtattctctcttctcttgtttggtgtgatagagagtgagaagagagaaatgtaattatttatgaaaaggacaaaaata 31013852  T
Q  101 tccttcaactnnnnnnnctaatctattctgttttattattgcttttc 147  Q
    ||||||||||       ||||||||| ||||||||||||||||||||    
T  31013851 tccttcaactaaaaaaactaatctatactgttttattattgcttttc 31013805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 259 - 388
Target Start/End: Complemental strand, 31013691 - 31013562
Alignment:
Q  259 cacggaaaccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattttctacacactcaattctatttcgtacac 358  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||    
T  31013691 cacggaagccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaaggtacgattcattttccacacactcaatcccatttcgtacac 31013592  T
Q  359 tgacttaagcgttggagtgctaacgtgcct 388  Q
    |||||| ||| |||||||||||||||||||    
T  31013591 tgacttgagcattggagtgctaacgtgcct 31013562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 16514414 - 16514512
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||  ||||||||||||||||||||||    
T  16514414 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtg 16514512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 29508839 - 29508741
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||    
T  29508839 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtg 29508741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 6217222 - 6217286
Alignment:
Q  401 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6217222 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 6217286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 9173129 - 9173050
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctct 472  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  9173129 ggaaaatatttaggtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctct 9173050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 15011294 - 15011368
Alignment:
Q  417 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  15011294 ttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 15011368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 6217363 - 6217274
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  6217363 ggaaaatacttgggtgacatagagttgggtgacattgg---------ccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 6217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 6722092 - 6722027
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||    
T  6722092 acttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgtg 6722027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 16514565 - 16514500
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||    
T  16514565 acttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtg 16514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 31526407 - 31526483
Alignment:
Q  31 tcttctcttgtttggtgtgatagagagtgagaagagagaaatgtacttatttatgaaaaggataaaaatatccttcaa 108  Q
    |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| | |||| |||||||||||||||    
T  31526407 tcttctcttgtttggtttgatagagagtgaaaagagagaaatgtaattatttatg-agaggacaaaaatatccttcaa 31526483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 38933728 - 38933663
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||    
T  38933728 acttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtg 38933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 29925682 - 29925623
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcatt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  29925682 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcatt 29925623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 29508687 - 29508753
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcac-aatgccacaatgtttgtg 465  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  29508687 acttaggtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatgcttgtg 29508753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 37961847 - 37961782
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||| |||||    
T  37961847 acttgggtgacatagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgcttgtg 37961782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 14229355 - 14229415
Alignment:
Q  405 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||    
T  14229355 ggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtg 14229415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 14470589 - 14470640
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  14470589 acttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatg 14470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 459
Target Start/End: Complemental strand, 32545929 - 32545870
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 459  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  32545929 acttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatg 32545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 38933613 - 38933675
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  38933613 ggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 38933675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 33018679 - 33018621
Alignment:
Q  407 tgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgcttgtg 33018621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 14470716 - 14470644
Alignment:
Q  417 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattg 487  Q
    |||| ||| |||||| ||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  14470716 ttggatgatattggtaacattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattg 14470644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 37632981 - 37633025
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacatt 437  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  37632981 ggaaaatacttgggtgacatagagtttggtgacattggtgacatt 37633025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 37961704 - 37961794
Alignment:
Q  392 aggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||| ||||||||||||||||||||          || |||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  37961704 aggaaaatacttgggtggcatagagttgggtgacattga---------ccgatcacaatgccataatgtttgtgtttctctctctttcacaagcattgtg 37961794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 6721965 - 6722039
Alignment:
Q  417 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||| ||||||||||||||||| |||||||||||  ||||||| |||||||  |||||||||||||| |||||||    
T  6721965 ttggatgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtg 6722039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 487
Target Start/End: Original strand, 24115917 - 24116006
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgttt--ctctctttcacaagcattg 487  Q
    ||||| |||| ||||||||| || |||||||| |||||||||||||||||||  ||||||  |||||||  | |||||||||||||||||    
T  24115917 acttgtgtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattg 24116006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 14892399 - 14892350
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  14892399 ttgggtgacatagagttggatgacattggtgacattgatcaatcacaatg 14892350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 45213941 - 45213892
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaa 449  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  45213941 acttgtgtgacatagagttgggtgacattgatgacattgaccaatcacaa 45213892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 2828610 - 2828672
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||| || |||| |||||||  ||||||||||| ||||||||||    
T  2828610 ggtgacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtg 2828672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 2893989 - 2894051
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||  ||||||| |||| ||  ||||||||||||||||||||||    
T  2893989 ggtgacattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtg 2894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 9172984 - 9173018
Alignment:
Q  397 aatacttgggtgacatagagttgggtgacattggt 431  Q
    |||||||||||||||||||||||||||||||||||    
T  9172984 aatacttgggtgacatagagttgggtgacattggt 9173018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 17560896 - 17560834
Alignment:
Q  269 gttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcatttt 331  Q
    ||||||||||||||||||||||||| ||||||||  ||||||  ||||| ||| |||||||||    
T  17560896 gttagcgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacaattcatttt 17560834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 32648228 - 32648154
Alignment:
Q  259 cacggaaaccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattttct 333  Q
    ||||||| |||||||| | |||||||||||||||||||||| || |||||||  ||||| ||| |||||| ||||    
T  32648228 cacggaagccgttagcacatccttctcctatataaaggtgactcaacgtcaccttcaaggtacaattcatattct 32648154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 14229462 - 14229403
Alignment:
Q  431 tgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||| |||||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  14229462 tgacattggc-aatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 14229403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 24116061 - 24115996
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||| |||||||||||||||||| |||| |||| ||||| ||||||||||| | ||||| |||||    
T  24116061 acttgtgtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgcttgtg 24115996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 32545783 - 32545840
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaa 457  Q
    |||| |||||||||||||| |||||||||||||||||||| ||| ||| ||| |||||    
T  32545783 acttaggtgacatagagttaggtgacattggtgacattggtcaaccacgatgtcacaa 32545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 487
Target Start/End: Complemental strand, 37762121 - 37762053
Alignment:
Q  421 gtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttc--tctctttcacaagcattg 487  Q
    |||| ||||||||||| || ||||||||||  ||||||| |||||||||  ||||||||||||||||||    
T  37762121 gtgatattggtgacatgggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattg 37762053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 40800265 - 40800184
Alignment:
Q  259 cacggaaaccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattttctacacact 340  Q
    |||||||  |||||||  ||||||||||||||||| ||||||| | ||||||  ||||| |||||||||||| || ||||||    
T  40800265 cacggaagtcgttagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcatttcctccacact 40800184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 29925708 - 29925672
Alignment:
Q  394 gaaaatacttgggtgacatagagttgggtgacattgg 430  Q
    |||||||||||||| ||||||||||||||||||||||    
T  29925708 gaaaatacttgggtaacatagagttgggtgacattgg 29925672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 38933586 - 38933622
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattg 429  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38933586 ggaaaatacttaggtgacatagagttgggtgacattg 38933622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 39819060 - 39819116
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccaca 456  Q
    ||||||||||||| | | | |||||||||||||||||||||||| ||||||| ||||    
T  39819060 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcaca 39819116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 12634889 - 12634848
Alignment:
Q  348 atttcgtacactgacttaagcgttggagtgctaacgtgcctg 389  Q
    ||||| |||||||||||||| ||||||||| |||||||||||    
T  12634889 atttcctacactgacttaagagttggagtgttaacgtgcctg 12634848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Complemental strand, 15011415 - 15011382
Alignment:
Q  397 aatacttgggtgacatagagttgggtgacattgg 430  Q
    ||||||||||||||||||||||| ||||||||||    
T  15011415 aatacttgggtgacatagagttgagtgacattgg 15011382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 456
Target Start/End: Complemental strand, 30610317 - 30610261
Alignment:
Q  399 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccaca 456  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| || |||| ||||    
T  30610317 tacttgggtgacatagaattgg-tggcattggtgacattggccaaccataatgtcaca 30610261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 1992235 - 1992271
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattg 429  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  1992235 ggaaaatacttggatgacatagagttaggtgacattg 1992271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 12127720 - 12127752
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgcctg 389  Q
    |||||||| ||||||||||||||||||||||||    
T  12127720 actgacttgagcgttggagtgctaacgtgcctg 12127752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 29925580 - 29925632
Alignment:
Q  413 agagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||| ||||||||||||||||  |||||||| || |||| |||||    
T  29925580 agagttgggtgatattggtgacattggcccctcacaatgtcagaatgcttgtg 29925632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 45715029 - 45714997
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgcctg 389  Q
    |||||||| ||||||||||||||||||||||||    
T  45715029 actgacttgagcgttggagtgctaacgtgcctg 45714997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 19655148 - 19655246
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  19655148 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 19655246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 291085 - 291185
Alignment:
Q  391 aaggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttc--tctctttcacaagcattgt 488  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||| ||||||    
T  291085 aaggaaaatacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgt 291184  T
Q  489 g 489  Q
    |    
T  291185 g 291185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 393 - 486
Target Start/End: Original strand, 19598322 - 19598417
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcatt 486  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||  |||||||||||||||||||    
T  19598322 ggaaaatacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 29699381 - 29699455
Alignment:
Q  417 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  29699381 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 29699455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 2953331 - 2953266
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2953331 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 2953266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 392 - 476
Target Start/End: Complemental strand, 30117977 - 30117893
Alignment:
Q  392 aggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctcttt 476  Q
    ||||||||| |||| |||||||||||||| |||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||    
T  30117977 aggaaaatatttggatgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctcttt 30117893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 16971285 - 16971220
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  16971285 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 16971220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 29699508 - 29699443
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  29699508 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtg 29699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 16439135 - 16439226
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||| ||| |||||||||||| | |||||||||||||| ||||||||||| ||||||| |||||||  ||||||||||||||||||||||    
T  16439135 acttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 16439226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 3899839 - 3899927
Alignment:
Q  394 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  3899839 gaaaatacttgggtgacatagagttgggtg---------acattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 3899927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 291238 - 291173
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  291238 acttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtg 291173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 3899980 - 3899915
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  3899980 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 3899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 12913800 - 12913888
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg--tttctctctttcacaagcatt 486  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||  |||||  | |||||||||||||||||||    
T  12913800 acttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcatt 12913888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 19655299 - 19655234
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||    
T  19655299 acttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgcttgtg 19655234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 3180200 - 3180110
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||| || |||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||| |||||||    
T  3180200 acttgtgtcacatagagttgg-taacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtg 3180110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 16971170 - 16971232
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  16971170 ggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 16971232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 30117827 - 30117887
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgttt 462  Q
    |||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  30117827 ttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgttt 30117887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 467
Target Start/End: Original strand, 1638454 - 1638521
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt 467  Q
    |||| ||||| |||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||    
T  1638454 acttaggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatgtttgtgtt 1638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 2093934 - 2093999
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||||| || |||| |||||    
T  2093934 acttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtg 2093999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 2356412 - 2356364
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcaca 448  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2356412 acttgtgtgacatagagttggatgacattggtgacattggccaatcaca 2356364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 12913947 - 12913879
Alignment:
Q  397 aatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||| || |||| |||||    
T  12913947 aatatttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtg 12913879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 465
Target Start/End: Complemental strand, 28819056 - 28818993
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||| |||| |||||||||||||| |||||| |||| ||||||| |||||    
T  28819056 ttgggtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgcttgtg 28818993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 393 - 431
Target Start/End: Original strand, 2953197 - 2953235
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggt 431  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2953197 ggaaaatacttgggtgacatagagttgggtgacattggt 2953235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 39031290 - 39031201
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctc--tctttcacaagcattgtg 489  Q
    |||| ||||||||||| ||||||||||||||||| ||  ||||||||||  || ||| ||||| ||||||  ||||||||||||||||||    
T  39031290 ttggatgacatagagtggggtgacattggtgacactgatcaatcacaatatcataatatttgtatttctctttctttcacaagcattgtg 39031201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 39777050 - 39777086
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattg 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  39777050 ttgggtgacatagagttgggtgacattggtgacattg 39777086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 459
Target Start/End: Original strand, 13312261 - 13312320
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 459  Q
    |||| |||||||||||||| |||||||||| ||||||||  ||||||||||| |||||||    
T  13312261 acttaggtgacatagagttaggtgacattgatgacattgatcaatcacaatgtcacaatg 13312320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 16802470 - 16802532
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||  ||||| ||||||||  ||||||||| ||||||||||||    
T  16802470 ggtgacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtg 16802532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 459
Target Start/End: Complemental strand, 32485690 - 32485631
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 459  Q
    ||||| |||||| ||||||||||||||||||||||||||  ||||||||||  |||||||    
T  32485690 acttgtgtgacacagagttgggtgacattggtgacattgatcaatcacaatatcacaatg 32485631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 489
Target Start/End: Complemental strand, 38134479 - 38134423
Alignment:
Q  435 attggccaatcacaatgccacaatgtttgtgtttc--tctctttcacaagcattgtg 489  Q
    ||||||||||||||||| ||||||| |||||||||  |||||||||| |||||||||    
T  38134479 attggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtg 38134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 22082997 - 22083045
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaat 450  Q
    |||||||||||||||||| ||||||||  |||||||| |||||||||||    
T  22082997 ttgggtgacatagagttgtgtgacattaatgacattgaccaatcacaat 22083045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 28818923 - 28819005
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||         ||||||||||| ||||||  |||| ||  ||||||||||||||||||||||    
T  28818923 acttgggtgacatagagttgggtgacattggt---------caatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtg 28819005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 456
Target Start/End: Complemental strand, 29385446 - 29385390
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccaca 456  Q
    ||||||||||||| | | | |||||||||||||||||||||||| ||||||| ||||    
T  29385446 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcaca 29385390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 463
Target Start/End: Original strand, 11983253 - 11983315
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttg 463  Q
    |||||||||||||||| |||| ||| |||||||||||||| |||||| |||| |||||| ||||    
T  11983253 acttgggtgacatagaattgg-tgatattggtgacattggtcaatcaaaatgtcacaatctttg 11983315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 26662541 - 26662482
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattgg-ccaatcacaatgccacaat 458  Q
    ||||| ||||| ||||||||||||| |||||||||||||| | |||||||||| ||||||    
T  26662541 acttgtgtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaat 26662482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 26934136 - 26934077
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattgg-ccaatcacaatgccacaat 458  Q
    ||||| ||||| ||||||||||||| |||||||||||||| | |||||||||| ||||||    
T  26934136 acttgtgtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaat 26934077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 489
Target Start/End: Original strand, 2356298 - 2356360
Alignment:
Q  427 ttggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagcattgtg 489  Q
    ||||||||||| | |||| ||||||  | |||| |||||||||||||||||| ||||||||||    
T  2356298 ttggtgacattaggcaattacaatgttataatgcttgtgtttctctctttcataagcattgtg 2356360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 31147140 - 31147193
Alignment:
Q  406 gtgacatagagttgggtgacattggtgacattggccaatcac-aatgccacaat 458  Q
    |||||||||||||| ||||||||| | | ||||||||||||| |||||||||||    
T  31147140 gtgacatagagttgagtgacattgataatattggccaatcacaaatgccacaat 31147193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 19272265 - 19272313
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaat 450  Q
    |||| ||||||||||||| |||| |||||||| |||| |||||||||||    
T  19272265 ttggatgacatagagttgagtgatattggtgaaattgaccaatcacaat 19272313  T

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Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 19598463 - 19598435
Alignment:
Q  400 acttgggtgacatagagttgggtgacatt 428  Q
    |||||||||||||||||||||||||||||    
T  19598463 acttgggtgacatagagttgggtgacatt 19598435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 41752954 - 41753052
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttc--tctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  41752954 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtg 41753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 393 - 486
Target Start/End: Complemental strand, 43139857 - 43139762
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcatt 486  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||    
T  43139857 ggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcatt 43139762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 51046221 - 51046123
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||| |||||||    
T  51046221 ggaaaatacttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtg 51046123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 47492195 - 47492097
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctc--tttcacaagcattgtg 489  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||||    
T  47492195 ggaaaatagttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtg 47492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 1801443 - 1801508
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1801443 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 1801508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 30734543 - 30734452
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctc--tctttcacaagcattgtg 489  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||  |||||||||||  ||||||||||||||||||    
T  30734543 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtg 30734452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 41753105 - 41753040
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  41753105 acttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgcttgtg 41753040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 33689173 - 33689264
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| |||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||| |||||||  ||||||||||||||||||||||    
T  33689173 acttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 33689264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 1801558 - 1801496
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  1801558 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 1801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 39057089 - 39057015
Alignment:
Q  409 acatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagc 483  Q
    |||||||||| ||||||||||||||||| || |||| |||||| ||| |||||||||||||||||||||||||||    
T  39057089 acatagagttaggtgacattggtgacatcggacaatgacaatgtcacgatgtttgtgtttctctctttcacaagc 39057015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 476
Target Start/End: Original strand, 18321648 - 18321724
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctcttt 476  Q
    |||||||  |||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| |||||||    
T  18321648 acttgggcaacatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctcttt 18321724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 470
Target Start/End: Complemental strand, 1801635 - 1801566
Alignment:
Q  392 aggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct 470  Q
    |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  1801635 aggaaaatacttgggtgacatagagttgggtgacattgg---------ccaatcacaatgccacaatgtttgtgtttct 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 45103106 - 45103171
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||||| |||||    
T  45103106 acttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgtg 45103171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 481
Target Start/End: Complemental strand, 30580890 - 30580814
Alignment:
Q  407 tgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttc--tctctttcacaa 481  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||| |||| || |||||||||  ||||||||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaa 30580814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 485
Target Start/End: Original strand, 50524706 - 50524786
Alignment:
Q  407 tgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcat 485  Q
    ||||||||||||| |||| | || |||||||| ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  50524706 tgacatagagttgagtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcat 50524786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 47492061 - 47492109
Alignment:
Q  417 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  47492061 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 47492109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 47677367 - 47677305
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||  ||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  47677367 ggtgacattgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 47677305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 30476585 - 30476524
Alignment:
Q  430 gtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||| ||||||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  30476585 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 30476524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 30580753 - 30580818
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||| |||||||||| ||||||||||||||||| |||| ||||||| |||| |||||| ||||||    
T  30580753 acttgagtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaatatttgtg 30580818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 30734399 - 30734464
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||| ||||||||||||| |||||||||| |||||||| || ||||||||| ||||||| |||||    
T  30734399 acttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtg 30734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 474
Target Start/End: Original strand, 50549969 - 50550046
Alignment:
Q  397 aatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    |||||||| |||| ||| || ||||||| ||||||||||||| |||||||||||   |||||| ||||||||||||||    
T  50549969 aatacttgagtgatataaagctgggtgatattggtgacattgaccaatcacaatattacaatgcttgtgtttctctct 50550046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 55223229 - 55223320
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| ||||||||||||| |||||||||||||| ||||| ||||||||||   | |||  || ||||  ||||||||||||||||||||||    
T  55223229 acttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtg 55223320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 29031826 - 29031764
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||| ||||| |||| |||||| ||||||||||||||||||  |||||||||||||||||||    
T  29031826 ggtgatattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 29031764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 50524843 - 50524792
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    |||||||||||||||||||| ||||||||||||| ||| | |||||||||||    
T  50524843 acttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatg 50524792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 51046072 - 51046135
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||| |||||||||||||| ||| |||||||||||||  |||||| |||| |||||||||||||    
T  51046072 ttggatgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgtttgtg 51046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 39430046 - 39429996
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaat 450  Q
    ||||| |||||||| |||||||||||||| |||||||||||||| ||||||    
T  39430046 acttgagtgacataaagttgggtgacattagtgacattggccaagcacaat 39429996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 433
Target Start/End: Complemental strand, 1272590 - 1272557
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtga 433  Q
    ||||||||||||||||||||||||||||||||||    
T  1272590 acttgggtgacatagagttgggtgacattggtga 1272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 5528332 - 5528396
Alignment:
Q  266 accgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattt 330  Q
    |||||| ||||||||||||||||||||| ||||||||  ||||||  ||||| ||||||| ||||    
T  5528332 accgttggcgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacgatttattt 5528396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 25410372 - 25410431
Alignment:
Q  271 tagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattt 330  Q
    |||||| |||||||| ||||||| | ||||||||||||||  || |||||||||||||||    
T  25410372 tagcgcttccttctcttatataaggatgattccacgtcaccctccagatacgattcattt 25410431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 435
Target Start/End: Complemental strand, 35538995 - 35538960
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgaca 435  Q
    |||||| |||||||||||||||||||||||||||||    
T  35538995 acttggatgacatagagttgggtgacattggtgaca 35538960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 27158316 - 27158282
Alignment:
Q  347 tatttcgtacactgacttaagcgttggagtgctaa 381  Q
    ||||||||||||||||||||| |||||||||||||    
T  27158316 tatttcgtacactgacttaagtgttggagtgctaa 27158282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 430
Target Start/End: Complemental strand, 49414555 - 49414525
Alignment:
Q  400 acttgggtgacatagagttgggtgacattgg 430  Q
    |||||||||||||||||||||||||||||||    
T  49414555 acttgggtgacatagagttgggtgacattgg 49414525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 39385800 - 39385755
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    |||||||||||||||||||||||  ||||| ||||| |||||||||    
T  39385800 ggtgacattggccaatcacaatgttacaatatttgtatttctctct 39385755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 7977640 - 7977584
Alignment:
Q  401 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaa 457  Q
    ||||||||||||||| || | |||||||| ||| ||||||||| ||||||| |||||    
T  7977640 cttgggtgacatagaatttgatgacattgatgatattggccaaccacaatgtcacaa 7977584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 8122971 - 8123003
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgcctg 389  Q
    |||||||| ||||||||||||||||||||||||    
T  8122971 actgacttgagcgttggagtgctaacgtgcctg 8123003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 30476500 - 30476536
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  30476500 ggtgacattggccaatcacaatgtcacaatgcttgtg 30476536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 33689288 - 33689252
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  33689288 ggtgacattggccaatcacaatgtcacaatgcttgtg 33689252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 34854843 - 34854745
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttc--tctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  34854843 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtg 34854745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 11016859 - 11016957
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| |||||||    
T  11016859 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtg 11016957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 38975795 - 38975893
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  38975795 ggaaaatacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 38975893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 393 - 487
Target Start/End: Complemental strand, 41018376 - 41018280
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattg 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||  |||||||||||||||||    
T  41018376 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattg 41018280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 15027532 - 15027630
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  15027532 ggaaaatacttgggtaacatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtg 15027630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 45231996 - 45231917
Alignment:
Q  395 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||    
T  45231996 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctct 45231917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 4290537 - 4290633
Alignment:
Q  395 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | |||||  ||||||||||||||| ||||||    
T  4290537 aaaatacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtg 4290633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 11017010 - 11016945
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  11017010 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 11016945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 393 - 465
Target Start/End: Original strand, 48000684 - 48000756
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  48000684 ggaaaatacttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgcttgtg 48000756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 393 - 487
Target Start/End: Complemental strand, 29053453 - 29053366
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattg 487  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  29053453 ggaaaatacttgggtgacatagagttgggtgacattgg---------ccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattg 29053366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 48000878 - 48000813
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  48000878 acttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgtctgtg 48000813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 7672023 - 7671961
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7672023 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 7671961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 405 - 489
Target Start/End: Complemental strand, 27028929 - 27028843
Alignment:
Q  405 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||| ||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||  |||||||| ||||||||||    
T  27028929 ggtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtg 27028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 458
Target Start/End: Complemental strand, 4290686 - 4290628
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaat 458  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  4290686 acttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 42628436 - 42628371
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||    
T  42628436 acttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtg 42628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 421 - 486
Target Start/End: Complemental strand, 22764820 - 22764753
Alignment:
Q  421 gtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcatt 486  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  22764820 gtgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 470
Target Start/End: Original strand, 27028725 - 27028795
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct 470  Q
    |||| ||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  27028725 actttggtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 474
Target Start/End: Original strand, 48000769 - 48000808
Alignment:
Q  435 attggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctct 48000808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 406 - 489
Target Start/End: Complemental strand, 30217588 - 30217504
Alignment:
Q  406 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||| | |||||||| ||||||| ||||||||||||  || ||||||| |||||||  |||||||||||||||||||    
T  30217588 gtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtg 30217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 38975946 - 38975881
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||| |||||||||||||| |||||||||||||||||||  |||| | |||||||||||| |||||    
T  38975946 acttaggtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgcttgtg 38975881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 42628321 - 42628381
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattg 487  Q
    |||||||||| |||||||||||||||||||| || ||||  ||||||||||||||||||||    
T  42628321 ggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattg 42628381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 34854719 - 34854757
Alignment:
Q  427 ttggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  34854719 ttggtgacattggccaatcacaatgccacaatgcttgtg 34854757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 4649346 - 4649391
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||    
T  4649346 ggtgacattggtcaatcacaatgctacaatgcttgtgtttctctct 4649391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 41945996 - 41945931
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||| ||||| ||||||||||| | ||||| |||||||||||  |||||| |||||    
T  41945996 acttgggtgacataaagttgagtgacattggtaatattggtcaatcacaatgttacaatgcttgtg 41945931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 488
Target Start/End: Original strand, 41945859 - 41945942
Alignment:
Q  407 tgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgt 488  Q
    ||||||||| ||| ||||||||| ||||||| | |||||| |||| || |||||||| |||| |  ||||||||||||||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgt 41945942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 15027661 - 15027618
Alignment:
Q  422 tgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 15027618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 29053338 - 29053376
Alignment:
Q  427 ttggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  29053338 ttggtgacattggccaatcacaatgcctcaatgcttgtg 29053376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 4649328 - 4649357
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggt 431  Q
    ||||||||||||||||||||||||||||||    
T  4649328 ttgggtgacatagagttgggtgacattggt 4649357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Original strand, 45231860 - 45231889
Alignment:
Q  400 acttgggtgacatagagttgggtgacattg 429  Q
    ||||||||||||||||||||||||||||||    
T  45231860 acttgggtgacatagagttgggtgacattg 45231889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 7671937 - 7671973
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  7671937 ggtgacattagccaatcacaatgccacaatgcttgtg 7671973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 21161275 - 21161243
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgcctg 389  Q
    |||||||| ||||||||||||||||||||||||    
T  21161275 actgacttgagcgttggagtgctaacgtgcctg 21161243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 26762968 - 26763000
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgcctg 389  Q
    |||||||| ||||||||||||||||||||||||    
T  26762968 actgacttgagcgttggagtgctaacgtgcctg 26763000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 27803402 - 27803370
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgcctg 389  Q
    |||||||| ||||||||||||||||||||||||    
T  27803402 actgacttgagcgttggagtgctaacgtgcctg 27803370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 55)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 29179745 - 29179647
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  29179745 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 29179647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 48994065 - 48993967
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  48994065 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 48993967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 392 - 489
Target Start/End: Complemental strand, 44706933 - 44706834
Alignment:
Q  392 aggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||    
T  44706933 aggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtg 44706834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 393 - 467
Target Start/End: Original strand, 46931987 - 46932061
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46931987 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt 46932061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 5995359 - 5995457
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  5995359 ggaaaatacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5995457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 37155036 - 37155134
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||  ||||||||||||||| ||||||    
T  37155036 ggaaaatacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtg 37155134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 393 - 485
Target Start/End: Original strand, 48498405 - 48498499
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcat 485  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||  ||||||||||||||||||    
T  48498405 ggaaaatacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcat 48498499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 399 - 489
Target Start/End: Complemental strand, 36290549 - 36290457
Alignment:
Q  399 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||  |||||||||||||||||||    
T  36290549 tacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtg 36290457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 1091685 - 1091594
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  1091685 acttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 1091594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 9157307 - 9157398
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||  |||||||||| |||||||||||    
T  9157307 acttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtg 9157398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 32540889 - 32540798
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||||||  |||||| ||||||||||  |||||||||||||||||||    
T  32540889 acttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtg 32540798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 393 - 488
Target Start/End: Complemental strand, 49445050 - 49444964
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagcattgt 488  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| |||||||||||||| |||||||||||||    
T  49445050 ggaaaatacttgggtgacatagagttgggtgacattgg---------ccaatcacaatgccacaatgcttgtgtttctctctctcacaagcattgt 49444964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 21630039 - 21630113
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  21630039 acttgcgtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 21630113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 5995510 - 5995445
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||    
T  5995510 acttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgcttgtg 5995445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 48993914 - 48993979
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  48993914 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 48993979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 4608993 - 4609084
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| |||| || |||||||||||||| |||||||||| || ||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  4608993 acttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 4609084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 17127705 - 17127614
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||| |||||||| ||||||||| ||||||||| ||||||| |||| ||||||| ||||||||||  |||||||||||||||||||    
T  17127705 acttgggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 17127614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 28395636 - 28395708
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  28395636 ttgggtaacatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 32991699 - 32991623
Alignment:
Q  31 tcttctcttgtttggtgtgatagagagtgagaagagagaaatgtacttatttatgaaaaggataaaaatatccttcaa 108  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| | |||| |||||||||||||||    
T  32991699 tcttctcttgtttggtttgatagaaagtgagaagagagaaatgtaattatttatg-agaggacaaaaatatccttcaa 32991623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 46932122 - 46932062
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtt 461  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  46932122 acttgggtgacatagagttgg-tgacattggtgacattgaccaatcacaatgccacaatgtt 46932062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 8337990 - 8337901
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  8337990 ggaaaatacttgggtgacatagagttgggtgacattga---------ccaatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtg 8337901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 402 - 465
Target Start/End: Complemental strand, 15220950 - 15220887
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| |||||    
T  15220950 ttgggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgcttgtg 15220887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 29371394 - 29371456
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  29371394 ggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 29371456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 29179594 - 29179659
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||    
T  29179594 acttggatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtg 29179659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 38674615 - 38674555
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagcattgtg 489  Q
    ||||| |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  38674615 ggtgatattggccaatcataatgtcacaatgcttgtgtttctctctttcacaagcattgtg 38674555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 32540755 - 32540810
Alignment:
Q  410 catagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgtg 32540810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 486
Target Start/End: Original strand, 45728294 - 45728372
Alignment:
Q  410 catagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcatt 486  Q
    ||||||||||||||| |||||||| |||| |||||||||||  ||||||| |||||||  |||||||||||||||||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcatt 45728372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 49444910 - 49444975
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||| |  |||||||||||  |||||| |||||    
T  49444910 acttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgcttgtg 49444975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 31342260 - 31342311
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  31342260 acttgggtgacatagagttgggtgacaccgatgacattggccaatcacaatg 31342311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 34062235 - 34062297
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||| || ||||  |||||||||||||| |||||||    
T  34062235 ggtgacattggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtg 34062297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 489
Target Start/End: Complemental strand, 46334084 - 46333996
Alignment:
Q  394 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg--tttctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||| ||||||||          |||||||||||| ||||||| |||||  ||||||||||||||||||||||||    
T  46334084 gaaaatacttgggtgacatagagttggatgacattga---------ccaatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtg 46333996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 17127561 - 17127626
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||| |||| |||||||| ||||||||| ||||||||| |||||||||||| ||||||| |||||    
T  17127561 acttgtgtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtg 17127626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 29371509 - 29371444
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||| ||||||||||| | |||||||||||||| |||| |||||||||||| ||||||| |||||    
T  29371509 acttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtg 29371444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 33219714 - 33219649
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||| |||||||||||| |||||||||||||||||  ||||||||||| || |||| |||||    
T  33219714 acttgggtaacatagagttggatgacattggtgacattgatcaatcacaatgtcataatgcttgtg 33219649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 488
Target Start/End: Complemental strand, 19711319 - 19711231
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagcattgt 488  Q
    |||| ||||| ||| |||| |||||||||||| ||||||||  || |||||| ||||||  || ||||||||||||||||| |||||||    
T  19711319 acttaggtgatataaagtttggtgacattggtaacattggctgattacaatgtcacaattcttatgtttctctctttcacatgcattgt 19711231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 741614 - 741552
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||| | ||||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  741614 ggtgacattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 741552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 6087557 - 6087628
Alignment:
Q  259 cacggaaaccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattt 330  Q
    |||||||||| ||| |||||||||||||||||||||||||  ||  || |||  ||||||||||||||||||    
T  6087557 cacggaaacccttaacgcctccttctcctatataaaggtggctctgcggcaccctcaagatacgattcattt 6087628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 34062208 - 34062245
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattgg 430  Q
    |||||||| |||||||||||||||||||||||||||||    
T  34062208 ggaaaatatttgggtgacatagagttgggtgacattgg 34062245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 3463620 - 3463692
Alignment:
Q  260 acggaaaccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattttc 332  Q
    |||||| ||||||||||||||||| ||||||||| ||||| ||   |||||  |||| |||||||||||||||    
T  3463620 acggaagccgttagcgcctccttcgcctatataagggtgactcattgtcaccctcaaaatacgattcattttc 3463692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 5695001 - 5694942
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcatt 486  Q
    ||||||||||| |||| |||||| |||||| |||||||||||  ||||||||||||||||    
T  5695001 ggtgacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatt 5694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 2573277 - 2573205
Alignment:
Q  409 acatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagcattgtg 489  Q
    |||||||||||| ||| |||||||||||||||||||        || ||| ||||||||||||| ||||||||||||||||    
T  2573277 acatagagttggatgatattggtgacattggccaat--------cataatatttgtgtttctctttttcacaagcattgtg 2573205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 12441096 - 12441045
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    |||||| ||||||||| || ||||||||||||| ||||||| ||||||||||    
T  12441096 acttggatgacatagaatttggtgacattggtggcattggctaatcacaatg 12441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 15220837 - 15220899
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||| ||||||| ||  ||||||| |||||||  ||||||||||||||||||||||    
T  15220837 ggtgacattggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtg 15220899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 450
Target Start/End: Original strand, 33734213 - 33734248
Alignment:
Q  415 agttgggtgacattggtgacattggccaatcacaat 450  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33734213 agttgggtgacattggtgacattggccaaccacaat 33734248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 36381589 - 36381640
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    |||||| ||||||||| || | ||| ||||||||||||||||||||||||||    
T  36381589 acttggatgacatagaattcgatgatattggtgacattggccaatcacaatg 36381640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 47303421 - 47303483
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| |||| |||||||||||| || ||||||||||||  |||||||||||||| |||||||    
T  47303421 ggtgatattgaccaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtg 47303483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 8337875 - 8337913
Alignment:
Q  427 ttggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  8337875 ttggtgacattggtcaatcacaatgtcacaatgtttgtg 8337913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 430
Target Start/End: Original strand, 48823891 - 48823921
Alignment:
Q  400 acttgggtgacatagagttgggtgacattgg 430  Q
    |||||||||||||||||||||||||||||||    
T  48823891 acttgggtgacatagagttgggtgacattgg 48823921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 38674504 - 38674541
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattgg 430  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  38674504 ggaaaatacttgggtgacatggagttgggtgatattgg 38674541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 47303640 - 47303673
Alignment:
Q  456 aatgtttgtgtttctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||| |||||||    
T  47303640 aatgtttgtgtttctctctttcacaaacattgtg 47303673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 4609129 - 4609097
Alignment:
Q  399 tacttgggtgacatagagttgggtgacattggt 431  Q
    |||||| ||||||||||||||||||||||||||    
T  4609129 tacttgtgtgacatagagttgggtgacattggt 4609097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 9884838 - 9884894
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccaca 456  Q
    |||| |||||||||| | | |||||||||||||||||||| ||| ||||||| ||||    
T  9884838 actttggtgacatagtggttggtgacattggtgacattggtcaaccacaatgtcaca 9884894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 26977774 - 26977742
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgcctg 389  Q
    |||||||| ||||||||||||||||||||||||    
T  26977774 actgacttgagcgttggagtgctaacgtgcctg 26977742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 34062321 - 34062285
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||| |||||||||||| |||||||||||||    
T  34062321 ggtgacattgaccaatcacaatgtcacaatgtttgtg 34062285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 47303507 - 47303471
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  47303507 ggtgacattggtcaatcacaatgtcacaatgtttgtg 47303471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 394 - 489
Target Start/End: Complemental strand, 35441116 - 35441019
Alignment:
Q  394 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  35441116 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 35441019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 5033151 - 5033249
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  5033151 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5033249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 8243536 - 8243438
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  8243536 ggaaaatacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 8243438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 33841739 - 33841641
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||||||||||    
T  33841739 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 33841641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 393 - 473
Target Start/End: Original strand, 2581815 - 2581895
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctc 473  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  2581815 ggaaaatacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 10086748 - 10086845
Alignment:
Q  394 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| || ||||||||||||  |||||||||||||| |||||||    
T  10086748 gaaaatacttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtg 10086845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 22649835 - 22649908
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgt 466  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||    
T  22649835 ggaaaatacttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatgcttgtgt 22649908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 5667094 - 5667182
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcatt 486  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||| ||  |||||||||||||||||||    
T  5667094 acttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcatt 5667182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 489
Target Start/End: Complemental strand, 45191272 - 45191177
Alignment:
Q  396 aaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||  |||||||||||||||||  |||||||| ||||||||||    
T  45191272 aaatacttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgtg 45191177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 402 - 485
Target Start/End: Complemental strand, 43844608 - 43844525
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagcat 485  Q
    ||||||||||||||||||| |||||||||||| ||||  ||||||||||| ||||||| |||||||||||||| ||||||||||    
T  43844608 ttgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctctcacaagcat 43844525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 5033302 - 5033237
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  5033302 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 5033237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 8796419 - 8796510
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctc--tctttcacaagcattgtg 489  Q
    ||||||||||||||||||| ||||| ||| |||| ||||| ||||||||||| ||||||| |||||||||||  ||||||||||||||||||    
T  8796419 acttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtg 8796510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 10086891 - 10086833
Alignment:
Q  407 tgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 10086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 33841588 - 33841653
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||||    
T  33841588 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtg 33841653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 35440966 - 35441031
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  35440966 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 35441031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 465
Target Start/End: Complemental strand, 5667245 - 5667173
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| || |||| |||||    
T  5667245 ggaaaatacttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgcttgtg 5667173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 34229638 - 34229729
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| ||||||||||||||||||||||| |||||||  | ||||||||||| || |||| |||||||  ||||||||||||||||||||||    
T  34229638 acttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtg 34229729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 429 - 486
Target Start/End: Original strand, 39850981 - 39851040
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcatt 486  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  39850981 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcatt 39851040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 4958597 - 4958687
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| |||||||||| || | ||| |||| ||||||||||||||||||||| || ||||||||||||  ||||||||||||||| ||||||    
T  4958597 acttgtgtgacatagaatttg-tgatattgatgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtg 4958687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 459
Target Start/End: Original strand, 45191124 - 45191183
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 459  Q
    ||||||||||||||||||||| ||| |||||||||||||   ||||||||||||||||||    
T  45191124 acttgggtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatg 45191183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 39851096 - 39851046
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaat 450  Q
    |||||| ||||||| ||||| |||||||||||||||||| |||||||||||    
T  39851096 acttggatgacataaagttgagtgacattggtgacattgaccaatcacaat 39851046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 1880236 - 1880286
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    |||||||||||||||| |||| ||||| ||||||||||| ||||||||||||    
T  1880236 acttgggtgacatagaattgg-tgacactggtgacattgaccaatcacaatg 1880286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 6296631 - 6296693
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||| |||||||||||| || |||| |||||||  ||||||||||||||| ||||||    
T  6296631 ggtgacattgaccaatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtg 6296693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 8796557 - 8796498
Alignment:
Q  406 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||| | ||||| ||||||||||||| ||||||| |||| ||||||| |||||    
T  8796557 gtgacatagagctaggtgatattggtgacattgaccaatcaaaatgtcacaatgcttgtg 8796498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 34541914 - 34541853
Alignment:
Q  430 gtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||| || | || |||||||||||| ||||||||||  |||||||||||||||||||    
T  34541914 gtgacattgacctagcaaaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 34541853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Original strand, 17927761 - 17927790
Alignment:
Q  357 actgacttaagcgttggagtgctaacgtgc 386  Q
    ||||||||||||||||||||||||||||||    
T  17927761 actgacttaagcgttggagtgctaacgtgc 17927790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 37618750 - 37618782
Alignment:
Q  426 attggtgacattggccaatcacaatgccacaat 458  Q
    |||||||||||||||||||||||||| ||||||    
T  37618750 attggtgacattggccaatcacaatgtcacaat 37618782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 51265436 - 51265533
Alignment:
Q  394 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  51265436 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 51265533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 6271692 - 6271790
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  6271692 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 6271790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 23444417 - 23444319
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  23444417 ggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 23444319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 395 - 489
Target Start/End: Complemental strand, 30861920 - 30861824
Alignment:
Q  395 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  30861920 aaaatacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 30861824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 26186155 - 26186066
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  26186155 acttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttctctctttcacaagcattgtg 26186066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 468
Target Start/End: Complemental strand, 3862687 - 3862619
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgttt 468  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3862687 acttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 468
Target Start/End: Complemental strand, 3871444 - 3871376
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgttt 468  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3871444 acttaggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 47661856 - 47661930
Alignment:
Q  417 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  47661856 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 47661930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 35682163 - 35682254
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctc--tctttcacaagcattgtg 489  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||  |||||||||||  ||||||||||||||||||    
T  35682163 acttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtg 35682254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 402 - 465
Target Start/End: Complemental strand, 47661981 - 47661918
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  47661981 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 47661918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 6271843 - 6271778
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||    
T  6271843 acttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgcttgtg 6271778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 427 - 489
Target Start/End: Original strand, 40789203 - 40789267
Alignment:
Q  427 ttggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  40789203 ttggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 40789267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 42375151 - 42375086
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  42375151 acttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtg 42375086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 23444268 - 23444331
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  23444268 ttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 23444331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 30710041 - 30709990
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30710041 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatg 30709990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 42375009 - 42375098
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||         ||||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  42375009 ggaaaatacttgggtgacatagagttgggtg---------acattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 42375098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 47404724 - 47404635
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| ||| |||  ||||||||||||||||||||||    
T  47404724 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtg 47404635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 489
Target Start/End: Original strand, 47762607 - 47762696
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||||||||||||| || |||| ||| ||||||||| ||||||||||||  ||||||||| ||||  ||||||||||||||||||||||    
T  47762607 ttgggtgacatagagctgagtgatatttgtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtg 47762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 3513165 - 3513089
Alignment:
Q  31 tcttctcttgtttggtgtgatagagagtgagaagagagaaatgtacttatttatgaaaaggataaaaatatccttcaa 108  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||| |||||||||||||||    
T  3513165 tcttctcttgtttggtttgatagagagtgaaaagagagagatgtaattatttatg-agaggacaaaaatatccttcaa 3513089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 51265586 - 51265521
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||    
T  51265586 acttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtg 51265521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 53954745 - 53954686
Alignment:
Q  406 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||    
T  53954745 gtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtg 53954686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 44379927 - 44380001
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||| | |||| ||||||| ||| ||||||||||    
T  44379927 acttggatgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttctctct 44380001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 35682301 - 35682242
Alignment:
Q  406 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||| ||||||| |||||    
T  35682301 gtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtg 35682242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 52028575 - 52028637
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| ||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  52028575 ggtgatattggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 52028637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 53954636 - 53954698
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||| ||||||| | ||||||||  |||||||||||||||||||    
T  53954636 ggtgacattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtg 53954698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 5048941 - 5048884
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaa 457  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||| |||| |||||    
T  5048941 acttggatgacatagagttgggtgacattgatgacattggtcaatcataatgtcacaa 5048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 31430597 - 31430560
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattgg 430  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31430597 ggaaaatacttgggtgacatagagttgggtgacattgg 31430560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 44380069 - 44380020
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  44380069 ttgggtgacatagagttgagtgacattggtgatattgaccaatcacaatg 44380020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 53402632 - 53402551
Alignment:
Q  259 cacggaaaccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattttctacacact 340  Q
    |||||||  |||||||||||| ||||||||||||| ||||||| | ||||||  ||||| |||||||||||| | |||||||    
T  53402632 cacggaagacgttagcgcctcattctcctatataagggtgatttcgcgtcaccctcaaggtacgattcatttcccacacact 53402551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 38714967 - 38714899
Alignment:
Q  397 aatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||| ||||||| || |||||||||||||||| |||  |||||| ||||| |||||||||||||    
T  38714967 aatacttggatgacatatagatgggtgacattggtgatattacccaatctcaatgtcacaatgtttgtg 38714899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 13119557 - 13119487
Alignment:
Q  260 acggaaaccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattt 330  Q
    |||||| |||||| |||||||||| ||||||||| ||||| || |||||||  ||||| ||||||||||||    
T  13119557 acggaagccgttaacgcctccttcacctatataagggtgactcaacgtcactctcaaggtacgattcattt 13119487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 55090107 - 55090046
Alignment:
Q  430 gtgacattggccaatcacaatgccacaatgtttgtg--tttctctctttcacaagcattgtg 489  Q
    |||||||||| ||||||||||| ||||||| |||||  | ||||||||||||||||||||||    
T  55090107 gtgacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtg 55090046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 31532809 - 31532756
Alignment:
Q  421 gtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    ||||||| |||||||||| |||||||||| | |||||||||||| |||||||||    
T  31532809 gtgacataggtgacattgaccaatcacaacgtcacaatgtttgtatttctctct 31532756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 25818387 - 25818435
Alignment:
Q  417 ttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||| |||||    
T  25818387 ttgggtgacattgatgacattggtcaatcacaatgtcacaatgattgtg 25818435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 2325121 - 2325070
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    ||||| ||||||||||||| |||||||||| |||||||| | ||||||||||    
T  2325121 acttgagtgacatagagtttggtgacattgatgacattgacaaatcacaatg 2325070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 452
Target Start/End: Original strand, 30861800 - 30861831
Alignment:
Q  421 gtgacattggtgacattggccaatcacaatgc 452  Q
    ||||||||||||||||||||||||||||||||    
T  30861800 gtgacattggtgacattggccaatcacaatgc 30861831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 431
Target Start/End: Original strand, 47404591 - 47404622
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggt 431  Q
    ||||||||||||||||||||||||||||||||    
T  47404591 acttgggtgacatagagttgggtgacattggt 47404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 430
Target Start/End: Original strand, 50384111 - 50384141
Alignment:
Q  400 acttgggtgacatagagttgggtgacattgg 430  Q
    |||||||||||||||||||||||||||||||    
T  50384111 acttgggtgacatagagttgggtgacattgg 50384141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Complemental strand, 24006194 - 24006165
Alignment:
Q  400 acttgggtgacatagagttgggtgacattg 429  Q
    ||||||||||||||||||||||||||||||    
T  24006194 acttgggtgacatagagttgggtgacattg 24006165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Original strand, 25617978 - 25618015
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacatt 437  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  25617978 acttgtgtgacatagagttgggtgacattgatgacatt 25618015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Original strand, 31430467 - 31430496
Alignment:
Q  400 acttgggtgacatagagttgggtgacattg 429  Q
    ||||||||||||||||||||||||||||||    
T  31430467 acttgggtgacatagagttgggtgacattg 31430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Complemental strand, 53618831 - 53618794
Alignment:
Q  348 atttcgtacactgacttaagcgttggagtgctaacgtg 385  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  53618831 atttcttacactgacttaagcgttagagtgctaacgtg 53618794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 24006096 - 24006132
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  24006096 ggtgacattggccaatcacaatgacacaatgcttgtg 24006132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 456
Target Start/End: Complemental strand, 31846952 - 31846896
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccaca 456  Q
    ||||||||||||| | | | |||||||||||||| ||||||||| ||||||| ||||    
T  31846952 acttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcaca 31846896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 50384131 - 50384167
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  50384131 ggtgacattggccaatcacaatgtcacaatgcttgtg 50384167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 52028661 - 52028625
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  52028661 ggtgacattggccaatcacaatgtcacaatgcttgtg 52028625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 27368 - 27287
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||    
T  27368 ggaaaatacttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctct 27287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 27217 - 27268
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  27217 acttgggtgacatagagttgggtgacattagtgatattggccaatcacaatg 27268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 551313 - 551215
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||||||    
T  551313 ggaaaatatttgggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtg 551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 393 - 465
Target Start/End: Original strand, 24975742 - 24975814
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  24975742 ggaaaatacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgcttgtg 24975814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 24587458 - 24587549
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||  || ||||||||||||||||    
T  24587458 acttaggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtg 24587549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 17750900 - 17750990
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||| ||  ||||||||||||||||||||||    
T  17750900 acttgtgtgacatagagttga-tgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtg 17750990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 12343097 - 12343188
Alignment:
Q  391 aaggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgt 488  Q
    |||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  12343097 aaggaaaatacttgggtgacatagagttgggtgacattagt---------caatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgt 12343187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 409 - 465
Target Start/End: Complemental strand, 12343232 - 12343176
Alignment:
Q  409 acatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtg 12343176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 17751043 - 17750978
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||| ||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||| |||||    
T  17751043 acttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtg 17750978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 465
Target Start/End: Complemental strand, 13043596 - 13043533
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||||||  ||||||| |||||    
T  13043596 ttgggtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgcttgtg 13043533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 24618598 - 24618649
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 451  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  24618598 acttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatg 24618649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 7384485 - 7384550
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||| ||||| |||||||||| ||||||| ||||||||| |||||||||||| || ||||||||||    
T  7384485 acttaggtgatatagagttggatgacattagtgacattgaccaatcacaatgtcataatgtttgtg 7384550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 31654331 - 31654376
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  31654331 ggtgacattggccaatcacaatgtcacaatgcttgtgtttctctct 31654376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 13043438 - 13043545
Alignment:
Q  393 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggc---------caatcacaatgccacaatgtttgtgtt--tctctctttcacaa 481  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||||||         |||||  |||| ||||||| |||||||  ||||||||||||||    
T  13043438 ggaaaatatttgggtgacatagaattgggtgacattggtgatattggcgatattggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaa 13043537  T
Q  482 gcattgtg 489  Q
    ||||||||    
T  13043538 gcattgtg 13043545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 551191 - 551227
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||| |||||||||||||||||||||||||    
T  551191 ggtgacattggtcaatcacaatgccacaatgtttgtg 551227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 10521960 - 10521899
Alignment:
Q  430 gtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    |||||||||| ||||||||||| || |||| ||||||||||  |||||||| ||||||||||    
T  10521960 gtgacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtg 10521899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 11714301 - 11714243
Alignment:
Q  272 agcgcctccttctcctatataaaggtgattccacgtcacagtcaagatacgattcattt 330  Q
    ||||||| |||||||||||||| ||||| ||||||||||  ||||| ||| ||||||||    
T  11714301 agcgccttcttctcctatataagggtgactccacgtcaccctcaaggtacaattcattt 11714243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 24618713 - 24618668
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttctctct 474  Q
    |||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  24618713 ggtgacgttgaccaatcacaatgtcacaatgcttgtgtttctctct 24618668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 459
Target Start/End: Original strand, 10521873 - 10521905
Alignment:
Q  427 ttggtgacattggccaatcacaatgccacaatg 459  Q
    ||||||||||||||||||||||||| |||||||    
T  10521873 ttggtgacattggccaatcacaatgtcacaatg 10521905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 7187 - 7097
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttct--ctctttcacaagcattgtg 489  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  7187 acttgtgtgacatagagttgg-tgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtg 7097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 7050 - 7109
Alignment:
Q  406 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||    
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgtg 7109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 63758 - 63845
Alignment:
Q  395 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt--tctctctttcacaagcattgtg 489  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  63758 aaaatacttgggtgacatagagttgggtg---------acattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtg 63845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 63869 - 63833
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  63869 ggtgacattggccaatcacaatgtcacaatgcttgtg 63833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 49700 - 49765
Alignment:
Q  400 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  49700 acttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtg 49765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 49815 - 49753
Alignment:
Q  429 ggtgacattggccaatcacaatgccacaatgtttgtgtttctc--tctttcacaagcattgtg 489  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  49815 ggtgacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtg 49753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 19125 - 19184
Alignment:
Q  406 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtg 465  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||| ||||||| |||||    
T  19125 gtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtg 19184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 3015 - 2974
Alignment:
Q  402 ttgggtgacatagagttgggtgacattggtgacattggccaa 443  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  3015 ttggctgacatagagttgggtgacatcggtgacattggccaa 2974  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 69272 - 69313
Alignment:
Q  348 atttcgtacactgacttaagcgttggagtgctaacgtgcctg 389  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  69272 atttcctacactgacttgagcgttggagtgctaacgtgcctg 69313  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 40831 - 40798
Alignment:
Q  356 cactgacttaagcgttggagtgctaacgtgcctg 389  Q
    ||||||||| ||||||||||||||||||||||||    
T  40831 cactgacttgagcgttggagtgctaacgtgcctg 40798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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