View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_2 (Length: 1053)
Name: NF3296_low_2
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 14 - 1022
Target Start/End: Complemental strand, 3985998 - 3984984
Alignment:
| Q |
14 |
cagagaccgataatacataaacgacataacaaaagacacattatatagacataacacccaaaagaaaaccttatactccgcacatcaaaactccaataaa |
113 |
Q |
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|||| |||||||| ||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3985998 |
cagaaaccgataagacataaatgatataacaaaaggcacattatatagacataacacctaaaagaaaaccttatactccgcacatcaaaactccaataaa |
3985899 |
T |
|
| Q |
114 |
aacaccaccaaactaattgctaccataaaaatcaatagaaactaaccaccaaagtcaaaaccaaatccttacacaactgcataaatcaaaagtaaagaca |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
3985898 |
aacaccaccaaactaattgctaccataaaaatcaatagaaactaaccaccaaagtcaa--ccaaatccccacataactgcataaatcaaaagtaaagaca |
3985801 |
T |
|
| Q |
214 |
gaacctcaaacttcatcatggatgactgcaaacacaagtttcaaacaccaatcgt-----------acaaaaaatccttcaaaaaa-ccataagaaccga |
301 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||| |
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| T |
3985800 |
gaacctcaaacttcatcatggatgactgcaaacacaagtttcaaacaccaatcgtccgctaatcgtaccaaaaacccttcaaaaaaaccataagaaccga |
3985701 |
T |
|
| Q |
302 |
ccaaaacccctataataacatctcacattctcttcccacccttgagctccaataaacaccataaaaacatctcttcgcnnnnnnnnngacaccataaaag |
401 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
3985700 |
ccaaaacccctaaaataacatcttacattctcttcccacccttgagctccaataaacaccataaaaacgtctcttcacaaaaaaaaaaacaccataaaag |
3985601 |
T |
|
| Q |
402 |
cannnnnnnnccacactcattcagattccaccaccgattgacccccggtctgccggagaagacaccaaacaagcccaattgactttagcctagaacttga |
501 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3985600 |
cattttttt--cacactcattcagattccaccaccgattgacccccggtctgccggagaagacaccaaacaagcccaattgactttagtctagaacttga |
3985503 |
T |
|
| Q |
502 |
ttctcaatctcaaagcaaaattgatcgccccaccaaaccccataagcaaatcaataaggccctcctcaactctcggtccatcgaaaaaggcaccatgacc |
601 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3985502 |
ttctcaatctcaaagcaaaagtgatcgccccatcaaactccataagcaaatcactaaggcactcctcaactctcggtccatcgaaaaaggcaccatgacc |
3985403 |
T |
|
| Q |
602 |
atcccaaaaatctgaagctacacactaactcccaatatcgaatcaaaaacgattgacccatcgaaatccctacgacaacttaatcgatgaagtttagtta |
701 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3985402 |
atcccaaaaatctgaagctacacactaactcccaatatcgaataaaaaacgattgacccattgaaatccctacgacaacttaatcgatgaagtttagtta |
3985303 |
T |
|
| Q |
702 |
aaaggttctttatactactataaagaaaaatgtacacgacctttgtctccaaaagnnnnnnnnnnnggtagtttgaagaaataatttacctttgaaaaat |
801 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||| |||||||| | |
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| T |
3985302 |
aaaggttctttatactactataaagaaaaatgtacacggcctttgtctccaaaag--tttttttttggcagttagaagaaataatttacatttgaaaatt |
3985205 |
T |
|
| Q |
802 |
aacatgtacaagttaaaaaattggggttcaaattttgttcaaggtgtttggtttaacaattttaatatttttattagttgaactataatttgtaaacctt |
901 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3985204 |
aacatgtacaagttaaaaaattggtattcaaattttgttcacggtgtttggtttaacaattttaatatttttattagttgaactataatttgtaaacctt |
3985105 |
T |
|
| Q |
902 |
tttctcttaaagttttatttgaagaaaaagacgtctatctaaatataagttttattttaaaattattagaggcaatattcttttacaaaaaataatcttc |
1001 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
3985104 |
tttctcttaaagttttatttgaagaaaaagatgtctctctaaatataagttttattttaaaattattagaggcattattcttttacaaaaaatactctgt |
3985005 |
T |
|
| Q |
1002 |
ataaagaaactagtctagaac |
1022 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
3985004 |
ataaagaaactagtcaagaac |
3984984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 855 - 893
Target Start/End: Original strand, 12965305 - 12965343
Alignment:
| Q |
855 |
taacaattttaatatttttattagttgaactataatttg |
893 |
Q |
| |
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||||||||| ||||||||||||||||||||||| ||||| |
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| T |
12965305 |
taacaatttcaatatttttattagttgaactatgatttg |
12965343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 855 - 889
Target Start/End: Complemental strand, 43200823 - 43200789
Alignment:
| Q |
855 |
taacaattttaatatttttattagttgaactataa |
889 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
43200823 |
taacaattttaatatttttactagttgaactataa |
43200789 |
T |
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