View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_21 (Length: 436)
Name: NF3296_low_21
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_21 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 14003254 - 14003657
Alignment:
| Q |
14 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003254 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg |
14003353 |
T |
|
| Q |
114 |
gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003354 |
gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga |
14003453 |
T |
|
| Q |
214 |
gcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattca |
313 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14003454 |
gcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcagcacaatgatcattca |
14003553 |
T |
|
| Q |
314 |
aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003554 |
aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac |
14003653 |
T |
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| Q |
414 |
aagc |
417 |
Q |
| |
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|||| |
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| T |
14003654 |
aagc |
14003657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 5767553 - 5767147
Alignment:
| Q |
14 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtg---ctagccagaaagagagacttgaattg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
5767553 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttctaaacaagcggcgctagccagaaagagagacttgaattg |
5767454 |
T |
|
| Q |
111 |
agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767453 |
agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg |
5767354 |
T |
|
| Q |
211 |
agagcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat |
310 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767353 |
agagcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgagagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat |
5767254 |
T |
|
| Q |
311 |
tcaaaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag |
410 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767253 |
tcaaaaaatcagtatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag |
5767154 |
T |
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| Q |
411 |
tacaagc |
417 |
Q |
| |
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||||||| |
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| T |
5767153 |
tacaagc |
5767147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 17627655 - 17627610
Alignment:
| Q |
304 |
tgatcattcaaaaaatcagcatattgaagatccaaatgttggatac |
349 |
Q |
| |
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|||| ||||||||||| |||||| |||||||||||||||||||||| |
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| T |
17627655 |
tgattattcaaaaaataagcatactgaagatccaaatgttggatac |
17627610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 19468138 - 19468064
Alignment:
| Q |
270 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg |
344 |
Q |
| |
|
||||||||||||||||||||||| | ||||| | |||||||||||||| ||||| |||||||||||||||||| |
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| T |
19468138 |
atcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttg |
19468064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 390 - 460
Alignment:
| Q |
274 |
ccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg |
344 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| ||| |||| |||||||||||||||||| |
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| T |
390 |
ccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttg |
460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 547382 - 547460
Alignment:
| Q |
270 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggata |
348 |
Q |
| |
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||||||||||||||||||||| ||| |||| |||| | |||||||| |||||| ||||||||| |||||||||||| |
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| T |
547382 |
atcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggata |
547460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 55908376 - 55908278
Alignment:
| Q |
252 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg |
350 |
Q |
| |
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|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||||| ||||| |
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| T |
55908376 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg |
55908278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 1037312 - 1037214
Alignment:
| Q |
252 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg |
350 |
Q |
| |
|
|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||||| ||||| |
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|
| T |
1037312 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg |
1037214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 38267213 - 38267105
Alignment:
| Q |
243 |
acaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
342 |
Q |
| |
|
||||| || |||||| ||||| | ||||| | |||||||||||||||||| |||||| |||||| | | |||||||| | |||||| ||||||||| |
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|
| T |
38267213 |
acaataactaaggtttatagacaccagatgaggaagaaacaaagacaactcggcaacatggtgatcagtgagaaaatcagtttcttgaaggtccaaatgt |
38267114 |
T |
|
| Q |
343 |
tggatacgt |
351 |
Q |
| |
|
|| |||||| |
|
|
| T |
38267113 |
tgtatacgt |
38267105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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