View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_22 (Length: 436)
Name: NF3296_low_22
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 37 - 391
Target Start/End: Original strand, 47461112 - 47461465
Alignment:
| Q |
37 |
ggtgtacgcttttaaacatgattgtgcaagtttctcatcaaaagggtaatttcattaattcgtttatggcttagtaatcnnnnnnnnctcactaaactta |
136 |
Q |
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| T |
47461112 |
ggtgtacgcttttaaacatgattgtgcaagtttctcatcaaaagggtaatttcactaatttgtttatggcttagtaatcttttttttctcacttaactta |
47461211 |
T |
|
| Q |
137 |
tttttcaggttatcgatttaatgtggtctcttgatttaaacatgtgtcacttccatcctttaattttactatgttaatccataatagtcattttcgtcac |
236 |
Q |
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| T |
47461212 |
tttttcaggttatcgacttaatgtggtctcttgatttaaaaatgtgtcacttccatcctttaattttactatgttaatccataatagtcattttcgtcac |
47461311 |
T |
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| Q |
237 |
atacggataaaatagcggttgacttgattgatactttgatatttatatgaattagacggtagtgaaatatatttgacatttgaaattgttttcaccctaa |
336 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47461312 |
atacgggtaaaatagcggttgacttgattgatactttgatatttatttgaa-tagacggtagtgaaagatatttgacatttgaaattgttttcaccctaa |
47461410 |
T |
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| Q |
337 |
actagttgttggaatacattcatcgggaaaaccctaaactagttgtcttctccaa |
391 |
Q |
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| T |
47461411 |
actagttgttggaatacattcattgggaaaaccctaaactagttgtcttccccaa |
47461465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 47461550 - 47461582
Alignment:
| Q |
399 |
ttgaaagatgctaattggattggtttctctgct |
431 |
Q |
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| T |
47461550 |
ttgaaagatgctaattggattggtttctctgct |
47461582 |
T |
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