View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_25 (Length: 406)
Name: NF3296_low_25
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 393
Target Start/End: Complemental strand, 37807730 - 37807340
Alignment:
| Q |
3 |
catcatcaaagatctcgtcaacgctcaacatgttaatgaaatctccatcgttgataacgcctccactgccaccgcaattgttctccagcaagcatcgtgg |
102 |
Q |
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| T |
37807730 |
catcatcaaagatctcgtcaacgctcaacatgttaatgaaatctccatcgttgataacgcctccactgccaccgcaattgttctccagcaagcatcgtgg |
37807631 |
T |
|
| Q |
103 |
gctttccaagaaggaaaattcaataaaggagattcagttgtcatgcttcactatgcctacggctctgtcaagaaagctattgaagcatacgtcacacgcg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37807630 |
gctttccaagaaggaaaattcaataaaggagattcagttgtcatgcttcactatgcctacggctctgtcaagaaagccattgaagcatacgtcacacgcg |
37807531 |
T |
|
| Q |
203 |
ccggtggaagagtcattgaggttccacttaccttccctgtcacctctgaagatgatatcatcagagagttccgtcatgtgctggaaaaaacaaagagcga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37807530 |
ccggtggaagagtcattgaggttccacttaccttccctgtcacctctgaagatgatatcatcagagagttccgtcatgtgctggaaaaaacaaagagcga |
37807431 |
T |
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| Q |
303 |
aggtagtagtaataaagttagattagcggttattgatcatgtgacttccatgccaagcatggtgattccggtgaaagagttagttaagatt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37807430 |
aggtagtagtaataaagttagattagcggttattgatcatgtgacttccatgccaagcatggtgattccggtgaaagagttagttaagatt |
37807340 |
T |
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