View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_33 (Length: 366)
Name: NF3296_low_33
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 4961064 - 4961423
Alignment:
| Q |
1 |
catatgatatttttatacatcaaaatatcaagtgaaaattaaaaacatatgatattttgatagaacgatcacgattgtgctctattacatgaatgcagag |
100 |
Q |
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| T |
4961064 |
catatgttatttttatacatcaaaatatcaagtgaaaattggaaacatatgatattttaatagaacgaccacgattgtgctctattgcatgaatgcagag |
4961163 |
T |
|
| Q |
101 |
aatttgacttcgagagcctaacattccccgttaaccaatccaataannnnnnnacttttcaacaatatactataattaaaagtaagtattaagcagatta |
200 |
Q |
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| T |
4961164 |
aatctgacttcgagagcctaacattccccgttaaccaataaaataatttttttgcttttcaacaatatactataattaaaagtaagtattaagcagatta |
4961263 |
T |
|
| Q |
201 |
taactaatctactgacattgtcattatggttgaattggtcaagattttgaactatagaagtgaggctcgtgctctttaatgattaatctaatgggataac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4961264 |
taactaatctactgacattgtcattatggttgaattggtcaagattttgaactatagaagtgaggctcgtgctctttaatgattaatctaatgggataac |
4961363 |
T |
|
| Q |
301 |
aaggacagactctttgttaaaagttgtagccatgaaattcaagtgggtcacctatgctac |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4961364 |
aaggacagactctttgttaaaagttgtagccatgaaattcaagtgggtcacctatgctac |
4961423 |
T |
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