View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_34 (Length: 359)

Name: NF3296_low_34
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_34
NF3296_low_34
[»] chr2 (5 HSPs)
chr2 (1-340)||(5699745-5700088)
chr2 (49-163)||(12324430-12324544)
chr2 (74-159)||(8485881-8485966)
chr2 (46-163)||(31380499-31380618)
chr2 (109-163)||(11183882-11183936)
[»] chr5 (3 HSPs)
chr5 (46-163)||(34272244-34272361)
chr5 (46-163)||(15027014-15027130)
chr5 (230-313)||(30793237-30793324)
[»] chr6 (5 HSPs)
chr6 (49-165)||(6919321-6919437)
chr6 (45-156)||(29181491-29181602)
chr6 (66-139)||(8171134-8171206)
chr6 (82-163)||(10086065-10086146)
chr6 (95-151)||(30062991-30063047)
[»] chr7 (3 HSPs)
chr7 (46-162)||(32471262-32471378)
chr7 (66-163)||(39773170-39773267)
chr7 (46-163)||(29367426-29367543)
[»] chr8 (6 HSPs)
chr8 (46-164)||(32848074-32848192)
chr8 (49-163)||(9617997-9618111)
chr8 (67-163)||(17011727-17011821)
chr8 (67-163)||(17545380-17545474)
chr8 (47-161)||(39721287-39721403)
chr8 (123-163)||(11364774-11364814)
[»] chr4 (6 HSPs)
chr4 (45-168)||(45610535-45610659)
chr4 (46-125)||(5842125-5842204)
chr4 (50-136)||(5198896-5198982)
chr4 (95-163)||(23406518-23406586)
chr4 (50-136)||(4848723-4848810)
chr4 (82-134)||(49272541-49272593)
[»] chr1 (6 HSPs)
chr1 (78-163)||(29274471-29274555)
chr1 (105-160)||(32897267-32897322)
chr1 (100-163)||(12900713-12900776)
chr1 (63-161)||(13399978-13400079)
chr1 (45-127)||(49138095-49138177)
chr1 (95-124)||(4625300-4625329)
[»] chr3 (2 HSPs)
chr3 (46-163)||(46505886-46506003)
chr3 (98-163)||(14594845-14594910)
[»] scaffold0012 (1 HSPs)
scaffold0012 (98-163)||(41910-41975)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 5700088 - 5699745
Alignment:
Q  1 gagagacttcaatcatttttcttcatacctt----tgattctcattggcctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtg 96  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  5700088 gagagacttcaatcatttttcttcataccttctgttgattctcattggcctatttatgcacagcccaaacttccttgattttaggatcactagtcacgtg 5699989  T
Q  97 tccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataacaaaagatggtagaaattagggtttgttgcttgtt 196  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| |||||    
T  5699988 ttcatttaccttaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataactgaaaatggtagaaattagggtttgttgtttgtt 5699889  T
Q  197 gaaattagtttcttgtaatctttttgtatctcgttgatagtgaagtggagagatctctccccagagtatgttattgttggaccaaatcaagaaaatattt 296  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5699888 gaaattaatttcttgtaatctttttgtatctcgttgatagtgaagtggagagatctctccccagagtatgttattgttggaccgaatcaagaaaatattt 5699789  T
Q  297 cttgtgtgtttgtttcttttctcttctatcttatggttgctgct 340  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  5699788 cttgtgtgtttgtttcttttctcttttatcttatcgttgctgct 5699745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 12324544 - 12324430
Alignment:
Q  49 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 148  Q
    |||||||||||| |||  || |||||||||| ||||||  | || || ||||||||||||||| |||||||||| | ||| |||||||||| ||||||||    
T  12324544 tttatgcacaactcaaggttacttgattttaagatcacacgccacgtctccatttacctcaactaattatgttaggtcaaatgtatttcctcatatgcta 12324445  T
Q  149 ttttgaatcataaca 163  Q
    |||||||||||||||    
T  12324444 ttttgaatcataaca 12324430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 8485881 - 8485966
Alignment:
Q  74 attttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcat 159  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| | |||||||| ||||||||    
T  8485881 attttaagaccactagtcatgtgtccatttacctcaatcaattatgttatgccaaatgtatatcctcaaatgctattctgaatcat 8485966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 31380618 - 31380499
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaacc--aattatgttatgccaagtgtatttcctaata 143  Q
    ||||||||||||||| |||  ||| ||||||||||||| | ||| || |||||||||||  ||||||  ||||||||||||| ||||||||||||  |||    
T  31380618 ctatttatgcacaactcaaggttcattgattttaggatgattagccacgtgtccatttatatcaaccccaattatgttatgctaagtgtatttccacata 31380519  T
Q  144 tgctattttgaatcataaca 163  Q
    ||||| ||||||||||||||    
T  31380518 tgctactttgaatcataaca 31380499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 11183936 - 11183882
Alignment:
Q  109 aaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||||  || |||||||||||||| || ||||||||||| |||||||||||    
T  11183936 aaccaattacattttgccaagtgtattttctcatatgctatttagaatcataaca 11183882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 34272361 - 34272244
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||||||||||||| | || | |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||| || |||||    
T  34272361 ctatttatgcacaatctaagcatccttgattttaggatcactagtcacatgtccatttacctaaaccaattatgttatgccaaatgtattttctcatatg 34272262  T
Q  146 ctattttgaatcataaca 163  Q
    ||||||||||||||||||    
T  34272261 ctattttgaatcataaca 34272244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 15027014 - 15027130
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||| ||||||||||  ||  ||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| ||||||| || || ||    
T  15027014 ctatatatgcacaacttaaggttccttgattttaggatcactagccgagtgtc-atttacctcaaccaattatgttatgccaaatgtattttctcatgtg 15027112  T
Q  146 ctattttgaatcataaca 163  Q
     ||||||| |||||||||    
T  15027113 ttattttggatcataaca 15027130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 30793237 - 30793324
Alignment:
Q  230 ttgatagtgaagtggagagatctct---ccccagagtatgttattgttggaccaaatcaagaaaatatttctt-gtgtgtttgtttct 313  Q
    |||||||||||||||||||||||||   ||| |||||| || ||||||||||| ||  | | ||| ||||||| ||||||||||||||    
T  30793237 ttgatagtgaagtggagagatctctctcccctagagtaagtcattgttggaccgaacaaggtaaacatttcttggtgtgtttgtttct 30793324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 6919437 - 6919321
Alignment:
Q  49 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 148  Q
    ||||||||||| |||||||| ||| ||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||| |  ||||||||    
T  6919437 tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta 6919338  T
Q  149 ttttgaatcataacaaa 165  Q
    | |||||||||||||||    
T  6919337 tattgaatcataacaaa 6919321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 29181602 - 29181491
Alignment:
Q  45 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 144  Q
    |||||||||||| | |||||||||| ||||||||||||||||||| ||  ||| ||||| ||||||||| | |||  |||||||||||||||| | ||||    
T  29181602 cctatttatgcatatcccaaacttctttgattttaggatcactagccacttgttcatttgcctcaaccagtaatgacatgccaagtgtatttcttcatat 29181503  T
Q  145 gctattttgaat 156  Q
    ||||||||||||    
T  29181502 gctattttgaat 29181491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 8171206 - 8171134
Alignment:
Q  66 cttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcct 139  Q
    ||||||||||||||| |||||||| ||  |||| |||| | ||||||||||| |||||| ||||||||||||||    
T  8171206 cttccttgattttag-atcactagccacatgtcaatttgcttcaaccaattaagttatgacaagtgtatttcct 8171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 10086146 - 10086065
Alignment:
Q  82 atcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||| ||  |||||||||| ||||||||||||| || | | | |||||||| || || ||||||||||||||||||||    
T  10086146 atcactagccacatgtccatttatctcaaccaattatatttttcaatgtgtattttctcatgtgctattttgaatcataaca 10086065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 30063047 - 30062991
Alignment:
Q  95 tgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattt 151  Q
    |||||||||||||||||||||||  || |||||||||||||| || || ||||||||    
T  30063047 tgtccatttacctcaaccaattacattttgccaagtgtattttctcatgtgctattt 30062991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 32471262 - 32471378
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||||||||||||| |||| |||||||||||||||||||||||   |  ||||||||| ||||||||||| || |||||||||| ||||||||| ||||     
T  32471262 ctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgccaagcgtatttcctcatatt 32471361  T
Q  146 ctattttgaatcataac 162  Q
    |||||||||||||||||    
T  32471362 ctattttgaatcataac 32471378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 39773267 - 39773170
Alignment:
Q  66 cttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||||| |||||||||||||||| ||  |||||||||  |||||||||||||||||||||| ||||| ||||| |||||  ||||||||||||||||    
T  39773267 cttccttaattttaggatcactagccacatgtccatttttctcaaccaattatgttatgccatgtgtaattccttatatgtcattttgaatcataaca 39773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 29367426 - 29367543
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    ||||||||| | |||||||| ||| || |||||||||| ||||| |  ||  |||||||| |||||||||||| |||| | ||||||||||||| ||||     
T  29367426 ctatttatgtataacccaaagttctttaattttaggattactagccgcgtacccatttacttcaaccaattatattatactaagtgtatttcctcatata 29367525  T
Q  146 ctattttgaatcataaca 163  Q
     |||||||||||||||||    
T  29367526 ttattttgaatcataaca 29367543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 32848074 - 32848192
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 145  Q
    |||||||||||||| |||||||||||||||||||||||||  || ||  ||| ||||||||||||||||| |||||||||||| |||| ||  | |||||    
T  32848074 ctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatttacctcaaccaatgatgttatgccaaatgtaattttttatatg 32848173  T
Q  146 ctattttgaatcataacaa 164  Q
    | | |||||||||||||||    
T  32848174 caaatttgaatcataacaa 32848192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 9617997 - 9618111
Alignment:
Q  49 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 148  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||  | ||| ||| ||||||||||||||| |||| ||| |||||||| | ||||||||    
T  9617997 tttatgcacaatccaaacttcattgattctaggatcactagccacatctccctttgcctcaaccaattatgatatgtcaaatgtatttcttcatatgcta 9618096  T
Q  149 ttttgaatcataaca 163  Q
    ||||  |||||||||    
T  9618097 ttttagatcataaca 9618111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 17011727 - 17011821
Alignment:
Q  67 ttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||||||||||||||||||||| || ||| |   ||||||||||||||||||||||||||||||||| | || || |||||||||| |||||||||    
T  17011727 ttccttgattttaggatcactagccaagtgaca--ttacctcaaccaattatgttatgccaagtgtatcttctcatttgctattttggatcataaca 17011821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 17545474 - 17545380
Alignment:
Q  67 ttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||||||||||||||||||||| || ||| |   ||||||||||||||||||||||||||||||||| | || || |||||||||| |||||||||    
T  17545474 ttccttgattttaggatcactagccaagtgaca--ttacctcaaccaattatgttatgccaagtgtatcttctcatttgctattttggatcataaca 17545380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 39721287 - 39721403
Alignment:
Q  47 tatttatgcacaacccaaacttccttgattttaggatcact--agtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 144  Q
    |||||||||||||| |||  || |||||||||| ||||| |  || ||||| |||||||||||| ||||||||| ||||| |||||||||||  | || |    
T  39721287 tatttatgcacaactcaagttttcttgattttaagatcattgtagccatgtatccatttacctcgaccaattatattatgtcaagtgtattttttcatgt 39721386  T
Q  145 gctattttgaatcataa 161  Q
    |||||||||||||||||    
T  39721387 gctattttgaatcataa 39721403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 11364774 - 11364814
Alignment:
Q  123 tgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||||||||| || ||||||| |||||||||||||||    
T  11364774 tgccaagtgtattttctcatatgctgttttgaatcataaca 11364814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 45610659 - 45610535
Alignment:
Q  45 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 144  Q
    ||||||||||||||||| || |||||||||| |||| ||||||||| |  |||| |||| ||||||| |||||| |||||||||||||| || ||  |||    
T  45610659 cctatttatgcacaaccaaaccttccttgatcttagaatcactagttacatgtctatttgcctcaacaaattatattatgccaagtgtaattacttctat 45610560  T
Q  145 g-ctattttgaatcataacaaaaga 168  Q
    | | | |||||||||||||||||||    
T  45610559 gtccaatttgaatcataacaaaaga 45610535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 5842125 - 5842204
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgc 125  Q
    ||||||||| |||| | |||||||||| ||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||    
T  5842125 ctatttatgtacaatctaaacttccttcattttagtatcaatagtcatgtgcccatttacctcaatcaaatatgtgatgc 5842204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 5198896 - 5198982
Alignment:
Q  50 ttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtattt 136  Q
    ||||||| || |||| ||||| |||||||   |||||||| ||  ||||||||| |||||||||||||||||||||| |||||||||    
T  5198896 ttatgcataatccaagcttccatgattttttaatcactagccacatgtccatttgcctcaaccaattatgttatgccgagtgtattt 5198982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 23406586 - 23406518
Alignment:
Q  95 tgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||| ||||| ||||||||||||  || | |||||||||||| || || ||||||||||||||||||||    
T  23406586 tgtctatttagctcaaccaattacatttttccaagtgtattttctcatgtgctattttgaatcataaca 23406518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 4848810 - 4848723
Alignment:
Q  50 ttatgcacaacccaaacttccttgattttagga-tcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtattt 136  Q
    ||||||| || |||| |||||||||||||   | ||||||| ||  ||||||||| | |||||||||||||||||||||| |||||||    
T  4848810 ttatgcataatccaagcttccttgatttttttaatcactagccacatgtccatttgcgtcaaccaattatgttatgccaaatgtattt 4848723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 49272593 - 49272541
Alignment:
Q  82 atcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtat 134  Q
    ||||||| |||  |||||||||||||||||||||||  || ||||||||||||    
T  49272593 atcactaatcacatgtccatttacctcaaccaattacattttgccaagtgtat 49272541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 29274555 - 29274471
Alignment:
Q  78 taggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||||| | ||  |||||||||  ||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||    
T  29274555 taggatcactggccacatgtccatttgtctcaaccaaatatgttatgccaagtgtatttccttata-gatattttgaatcataaca 29274471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 32897322 - 32897267
Alignment:
Q  105 cctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcata 160  Q
    |||||||||||| ||||||||||||||||||| || ||||  ||||||||||||||    
T  32897322 cctcaaccaattctgttatgccaagtgtattttctcatatagtattttgaatcata 32897267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 12900776 - 12900713
Alignment:
Q  100 atttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    ||||| ||||||||||||  || |||||||||||||| || || |||||| |||||||||||||    
T  12900776 atttagctcaaccaattacattttgccaagtgtattttctcatgtgctatcttgaatcataaca 12900713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 13400079 - 13399978
Alignment:
Q  63 aaacttccttgattttaggatcactagtcat---gtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcat 159  Q
    ||||||||||||||||| | | ||||| |||   || || ||||| ||||| |||||||||||| |||| |||| || || | |||||||||||||||||    
T  13400079 aaacttccttgattttatgtttactagccatatagtatcgatttatctcaaacaattatgttataccaaatgtactttcttaaatgctattttgaatcat 13399980  T
Q  160 aa 161  Q
    ||    
T  13399979 aa 13399978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 49138177 - 49138095
Alignment:
Q  45 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgcca 127  Q
    |||||||||| |||| |||| ||||||| |||||||||| | |||  |  |||| |||| |||| ||||||||||||||||||    
T  49138177 cctatttatgtacaatccaagcttcctttattttaggatgaatagctacatgtcaatttgcctcgaccaattatgttatgcca 49138095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 4625329 - 4625300
Alignment:
Q  95 tgtccatttacctcaaccaattatgttatg 124  Q
    ||||||||||||||||||||||||||||||    
T  4625329 tgtccatttacctcaaccaattatgttatg 4625300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 46506003 - 46505886
Alignment:
Q  46 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacct-caaccaattatgttatgccaagtgtatttcctaatat 144  Q
    ||||||||||||| || ||  |||||| ||||||||||||| || |||||||||||| |  | |||| ||| || ||||||||||||| |||||| | ||    
T  46506003 ctatttatgcacatcc-aaggttcctttattttaggatcaccagacatgtgtccattcaatttcaactaataatattatgccaagtgtgtttcctcaaat 46505905  T
Q  145 gctattttgaatcataaca 163  Q
    ||||| |||||||||||||    
T  46505904 gctatattgaatcataaca 46505886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 14594845 - 14594910
Alignment:
Q  98 ccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||| |||||||||| |||||| |||||| |||||  | |||||||||||||||||||||||    
T  14594845 ccatttacttcaaccaattctgttatcccaagtctattttttcatatgctattttgaatcataaca 14594910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 41975 - 41910
Alignment:
Q  98 ccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 163  Q
    |||||||| |||||||||| |||||| |||||| |||||  | |||||||||||||||||||||||    
T  41975 ccatttacttcaaccaattctgttatcccaagtctattttttcatatgctattttgaatcataaca 41910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University