View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_35 (Length: 355)
Name: NF3296_low_35
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 50127975 - 50128299
Alignment:
| Q |
19 |
cattaccagagtttgggtgattttgaacacgacccaagattgttctgatggtattttcgatcccagcagtgttcctctccaaagtttgaacatcaagctg |
118 |
Q |
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| T |
50127975 |
cattaccagagtttgggtgattttgaacacgacccaagattgttctgatggtattttcaatcccagcagtgttcctctccaaagtttgaacatcaagctg |
50128074 |
T |
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| Q |
119 |
aggtctttcaaggcttttccctgatgggtcaccgacacgcgcggtggcaccaccgatcaacgcgacgacgttatggccggagcggcggaaccatgagaga |
218 |
Q |
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| T |
50128075 |
aggtctttcaaggcttttccctgatgggtcaccgacacgcgcggtggcaccaccgatcaacgcgacgacgttatggccggagcggcggaaccatgagaga |
50128174 |
T |
|
| Q |
219 |
acaatgagagccaataaattgcccaaatgcaagctttgggcagttgggtcgaatccacagtaaacttttaagggtgcgttgatggtgtttgatgaaatgg |
318 |
Q |
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| T |
50128175 |
acaatgagagccaataaattgcccaaatgcaagctttgggcagttgggtcgaatccacagtaaacttttaagggtgcgttgatggtgtttgatgaaatgg |
50128274 |
T |
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| Q |
319 |
ttctgagagattcatttgttattga |
343 |
Q |
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| T |
50128275 |
ttctgagagactcatttgttattga |
50128299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 37 - 339
Target Start/End: Complemental strand, 27231989 - 27231687
Alignment:
| Q |
37 |
gattttgaacacgacccaagattgttctgatggtattttcgatcccagcagtgttcctctccaaagtttgaacatcaagctgaggtctttcaaggctttt |
136 |
Q |
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| T |
27231989 |
gattttgagaacgacccaagattgttctgatggtgttttcaatcccaacagtattcctctccaaagtttcaccatccagctggggtctttcgatgttttt |
27231890 |
T |
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| Q |
137 |
ccctgatgggtcaccgacacgcgcggtggcaccaccgatcaacgcgacgacgttatggccggagcggcggaaccatgagagaacaatgagagccaataaa |
236 |
Q |
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||| || ||||||||||||||||| || || ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||| |||| | |
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| T |
27231889 |
cccagacgggtcaccgacacgcgctgtcgcgccaccgatcaatgccacaacgttatggccggagcggcggaaccatgagaggacaatgagacccaacagg |
27231790 |
T |
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| Q |
237 |
ttgcccaaatgcaagctttgggcagttgggtcgaatccacagtaaacttttaagggtgcgttgatggtgtttgatgaaatggttctgagagattcatttg |
336 |
Q |
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| T |
27231789 |
ttgcccaaatgcaagctttcagcagttggatcgaatccacagtagacttttaagggtgcattgatggtgtttgatgaaatgcttctaagagaatcatttg |
27231690 |
T |
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| Q |
337 |
tta |
339 |
Q |
| |
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||| |
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| T |
27231689 |
tta |
27231687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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