View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_40 (Length: 333)
Name: NF3296_low_40
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 40546028 - 40545719
Alignment:
| Q |
9 |
gacatcatcacatgctcatttcacaattccaagaactaaagaaggattggcatcaaattcatcatcatgcaaattgcnnnnnnnnnnnnnnnnnnnnntc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40546028 |
gacatcatcacatgctcatttcacaattccaagaactaaagaaggattggcatcaaattcatcatcatgcaaattgccacacacacatgtacacacactc |
40545929 |
T |
|
| Q |
109 |
tcaaaggaattaatcgagtggctttaaatccaggtgtatactccgtagacctacatatataagaggta-cnnnnnnncaaaaggagtacattatttttct |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
40545928 |
tcaaaggaattaatcgactggctttaaatccaggtgtatactccgtagacctacatatataagaggtaacaaaaaaacaaaaggagtacattatttttct |
40545829 |
T |
|
| Q |
208 |
ctttgtctccttccctatctacacctagaaaatcaataacactaaatgcaacttgaagtatattttgaatcaatgctggctagtgcaccttcactacaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40545828 |
ctttgtctccttccctatctacacctagaaaattaataacactaaatgcaacttgaagtatattttgaatcaatgctagctagtgcaccttcactacaag |
40545729 |
T |
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| Q |
308 |
aggaaagtct |
317 |
Q |
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|||||||||| |
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| T |
40545728 |
aggaaagtct |
40545719 |
T |
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