View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_41 (Length: 332)
Name: NF3296_low_41
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 44968865 - 44968549
Alignment:
| Q |
1 |
acaatactccaacataagaaagacaatgtactaaatcaaatatgttttcttagttacgaaattatcaagacacgtgcatttgtgacgcgtgtaatannnn |
100 |
Q |
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| T |
44968865 |
acaatactccaacataagaaagacaatgtactaaatcaa-tatgttttcttagttacgaaattatcaagacacatgcatttgtgacgcgtgtaatatatt |
44968767 |
T |
|
| Q |
101 |
nnnnatcgtttactgctttgagaaaatttatccaacaaacaagaagatgcaatgaaccactactattaaaagcatagattcaatttccaatcttaatgtc |
200 |
Q |
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| T |
44968766 |
ttttatcgtttactgctttgagaaaatttatccaacaaacaagaagatgcaatgaactactactactaaaagcatagattcaatttccaatcttaatgtc |
44968667 |
T |
|
| Q |
201 |
tcgttagaatatgaatatcccaaacaagaaaacaaatataggaaatggatccaataagtgtcccaacaataacaccttgatgttaatggcaatatacatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44968666 |
tcgttagaatatgaatatcccaaacaagaaaacaaatataggaaatggatccaataagtgtcccaaccataacaccttgatgttaatggcaatatacatc |
44968567 |
T |
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| Q |
301 |
accttactatacaaagac |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
44968566 |
accttactatacaaagac |
44968549 |
T |
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