View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_43 (Length: 331)
Name: NF3296_low_43
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 319
Target Start/End: Complemental strand, 37503673 - 37503354
Alignment:
| Q |
4 |
aaggattattaaggaatgggtattgctctacnnnnnnngcatgtcttctatttacaaattactagtccatctttcagttaaagactttccatatggttgc |
103 |
Q |
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| T |
37503673 |
aaggattattaaggaatgggtattgttctactttttttgcatgtcttctatttacaaat-actagtccatctttcagtttaagactttccatatgcttgc |
37503575 |
T |
|
| Q |
104 |
tttgtgcatatataatattca-----acagaaatatggcaacatagtttacatataaaagtttgagtaaatttggtatttgtaccctgtttcctctgttt |
198 |
Q |
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| T |
37503574 |
tttgtgcatatataatattcagcagcgcagaaatatggcaacacagtttacatataaaagtttgagtaaatttggtatttctaccctgtttcctctgttt |
37503475 |
T |
|
| Q |
199 |
tacattacaagatgagcttaccacgatgtgtatatctgctttctttattagtgacttgttttagtcccattgttaaattacagtggagcaaaattctaaa |
298 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37503474 |
tacattacaagatgagcttaccacgatgtatatatctgctttctttattagtgacttgttttagtcccattgttaaattacagtggagcaaaattctaaa |
37503375 |
T |
|
| Q |
299 |
acataacatgtaatacatatt |
319 |
Q |
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||||||||||||||||||||| |
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| T |
37503374 |
acataacatgtaatacatatt |
37503354 |
T |
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