View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_45 (Length: 323)
Name: NF3296_low_45
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 40200048 - 40200190
Alignment:
| Q |
167 |
aaaacagttaacggagtaaacatatgagccatatgggtgcaacttcaaagtaggaatttctttgttgtttgccgaagcagtactatcgcaggacaattta |
266 |
Q |
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| T |
40200048 |
aaaacagttaacggagtaaacatatgagccatatcggtgcaacttcaaagtaggaatttctttgttgtttgccgaagcagtactatcgcaggacaattta |
40200147 |
T |
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| Q |
267 |
gcactataataatttcataaaaatgtttttctcaactatatat |
309 |
Q |
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| T |
40200148 |
gcactataataatttcataaaaatgtttttctcaactatatat |
40200190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 40199921 - 40199966
Alignment:
| Q |
41 |
cacccacaaattgaataactaacaacaatccaaagaaataagtatg |
86 |
Q |
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| T |
40199921 |
cacccacaaattgaataactaacaacaatccaaagaaataagtatg |
40199966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40199822 - 40199861
Alignment:
| Q |
1 |
aaagagaaagttacgtgttccattttctaatttacatgcc |
40 |
Q |
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| T |
40199822 |
aaagagaaagttatgtgttccattttctaatttacatgcc |
40199861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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