View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_5 (Length: 689)

Name: NF3296_low_5
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_5
NF3296_low_5
[»] chr7 (20 HSPs)
chr7 (17-399)||(30516033-30516415)
chr7 (432-671)||(30515779-30516018)
chr7 (25-59)||(38134422-38134456)
chr7 (25-59)||(44172906-44172940)
chr7 (27-63)||(10893359-10893395)
chr7 (19-59)||(21247752-21247792)
chr7 (15-59)||(36314643-36314687)
chr7 (24-58)||(19930958-19930992)
chr7 (30-59)||(2143869-2143898)
chr7 (30-59)||(2144555-2144584)
chr7 (30-59)||(5937437-5937466)
chr7 (26-59)||(7133294-7133327)
chr7 (17-58)||(12278836-12278877)
chr7 (14-55)||(23165286-23165327)
chr7 (17-50)||(41229323-41229356)
chr7 (27-59)||(3119407-3119439)
chr7 (14-58)||(18233615-18233659)
chr7 (27-59)||(23930230-23930262)
chr7 (27-59)||(37775993-37776025)
chr7 (17-57)||(41360911-41360951)
[»] chr4 (26 HSPs)
chr4 (17-59)||(5654607-5654649)
chr4 (25-59)||(10546157-10546191)
chr4 (25-59)||(18513257-18513291)
chr4 (22-59)||(11110209-11110246)
chr4 (17-54)||(43188613-43188650)
chr4 (17-58)||(44796979-44797020)
chr4 (26-58)||(26276026-26276058)
chr4 (28-59)||(34589722-34589753)
chr4 (25-59)||(2976703-2976737)
chr4 (25-59)||(8457934-8457968)
chr4 (17-51)||(9996841-9996875)
chr4 (25-59)||(14465310-14465344)
chr4 (25-59)||(20743294-20743328)
chr4 (25-59)||(31243564-31243598)
chr4 (25-59)||(43299987-43300021)
chr4 (25-59)||(43300625-43300659)
chr4 (17-59)||(46180952-46180994)
chr4 (17-59)||(51673458-51673500)
chr4 (30-59)||(13307891-13307920)
chr4 (25-58)||(19230326-19230359)
chr4 (25-58)||(32910560-32910593)
chr4 (30-59)||(37496718-37496747)
chr4 (26-58)||(2234260-2234292)
chr4 (25-57)||(12077837-12077869)
chr4 (25-57)||(24613719-24613751)
chr4 (30-62)||(28663506-28663538)
[»] chr1 (14 HSPs)
chr1 (25-62)||(11571594-11571631)
chr1 (25-59)||(3921676-3921710)
chr1 (25-58)||(40747790-40747823)
chr1 (28-59)||(14332420-14332451)
chr1 (27-66)||(24701109-24701148)
chr1 (25-59)||(2471229-2471263)
chr1 (17-59)||(7988467-7988509)
chr1 (25-59)||(30847736-30847770)
chr1 (26-59)||(2445880-2445913)
chr1 (25-58)||(6427359-6427392)
chr1 (30-59)||(18946050-18946079)
chr1 (25-58)||(29230074-29230107)
chr1 (25-58)||(41017421-41017454)
chr1 (25-57)||(42325569-42325601)
[»] chr8 (19 HSPs)
chr8 (25-59)||(29198495-29198529)
chr8 (25-58)||(34201063-34201096)
chr8 (26-58)||(10441213-10441245)
chr8 (20-59)||(3508056-3508095)
chr8 (25-59)||(12985401-12985435)
chr8 (25-59)||(37225759-37225793)
chr8 (25-59)||(40063960-40063994)
chr8 (25-58)||(1639499-1639532)
chr8 (26-59)||(7616865-7616898)
chr8 (25-58)||(14740739-14740772)
chr8 (30-59)||(31119101-31119130)
chr8 (25-58)||(31236594-31236627)
chr8 (30-59)||(42874536-42874565)
chr8 (25-57)||(1591308-1591340)
chr8 (27-55)||(3520105-3520133)
chr8 (30-62)||(6960689-6960721)
chr8 (25-57)||(14227231-14227263)
chr8 (25-57)||(29447128-29447160)
chr8 (17-57)||(38902485-38902525)
[»] chr5 (15 HSPs)
chr5 (25-59)||(11596471-11596505)
chr5 (27-59)||(43208290-43208322)
chr5 (25-56)||(28296337-28296368)
chr5 (17-56)||(32428945-32428984)
chr5 (25-59)||(2039865-2039899)
chr5 (25-59)||(18607113-18607147)
chr5 (17-59)||(30080517-30080559)
chr5 (25-59)||(31264447-31264481)
chr5 (28-58)||(41558671-41558701)
chr5 (25-58)||(30098335-30098368)
chr5 (25-58)||(38749580-38749613)
chr5 (25-66)||(39424650-39424691)
chr5 (25-57)||(9449478-9449510)
chr5 (22-58)||(40097617-40097653)
chr5 (25-57)||(41558701-41558733)
[»] chr2 (12 HSPs)
chr2 (25-59)||(18570981-18571015)
chr2 (25-58)||(40681991-40682024)
chr2 (25-57)||(30563418-30563450)
chr2 (25-63)||(10254036-10254074)
chr2 (25-59)||(10535775-10535809)
chr2 (25-59)||(31026704-31026738)
chr2 (17-58)||(4332927-4332968)
chr2 (25-58)||(12933753-12933786)
chr2 (25-58)||(19613630-19613663)
chr2 (17-58)||(37497121-37497162)
chr2 (30-59)||(43586021-43586050)
chr2 (25-58)||(44605156-44605189)
[»] chr6 (22 HSPs)
chr6 (26-59)||(9024192-9024225)
chr6 (25-57)||(2140499-2140531)
chr6 (27-59)||(10157995-10158027)
chr6 (25-60)||(8148129-8148164)
chr6 (25-59)||(4859129-4859163)
chr6 (24-58)||(9629391-9629425)
chr6 (25-63)||(10395457-10395495)
chr6 (17-59)||(19602197-19602239)
chr6 (25-59)||(29049894-29049928)
chr6 (25-59)||(34446574-34446608)
chr6 (25-58)||(6299521-6299554)
chr6 (25-58)||(6306331-6306364)
chr6 (30-59)||(6751898-6751927)
chr6 (25-58)||(9617443-9617476)
chr6 (30-59)||(10031584-10031613)
chr6 (30-59)||(19369831-19369860)
chr6 (25-58)||(30866161-30866194)
chr6 (25-58)||(33076417-33076450)
chr6 (27-59)||(10335392-10335424)
chr6 (25-57)||(17168903-17168935)
chr6 (30-58)||(29959189-29959217)
chr6 (20-56)||(32299279-32299315)
[»] scaffold0571 (1 HSPs)
scaffold0571 (19-59)||(7693-7733)
[»] chr3 (13 HSPs)
chr3 (19-59)||(20691322-20691362)
chr3 (25-59)||(9210841-9210875)
chr3 (17-59)||(11093571-11093613)
chr3 (25-59)||(12704673-12704707)
chr3 (25-59)||(21149076-21149110)
chr3 (28-58)||(40017386-40017416)
chr3 (25-59)||(40150587-40150621)
chr3 (25-59)||(52369784-52369818)
chr3 (25-58)||(9624650-9624683)
chr3 (25-58)||(21110480-21110513)
chr3 (25-58)||(32166200-32166233)
chr3 (25-58)||(41319327-41319360)
chr3 (25-57)||(16789668-16789700)
[»] scaffold0037 (1 HSPs)
scaffold0037 (25-58)||(102914-102947)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-58)||(225285-225318)
[»] scaffold0598 (1 HSPs)
scaffold0598 (25-57)||(8071-8103)
[»] scaffold0024 (1 HSPs)
scaffold0024 (30-62)||(18121-18153)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 30516415 - 30516033
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatcgcatctgaaaccatcggcgtcagacatatcttccacccgaagtgtgggtgtttacga 116  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30516415 acactaacaataatttgagaaaatgatataattcaatgtaatcgcatctgaaaccatcggtgtcagacatatcttccacccgaagtgtgggtgtttacga 30516316  T
Q  117 gtgatcacaacatactattttacaaaaatgaaatacgagttaatgaaatgtagtgtaagtgtaagatacctcataattagtgataacaccattgtgaaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30516315 gtgatcacaacatactattttacaaaaatgaaatacgagttaatgaaatgtagtgtaagtgtaagatacctcataattagtgatcacaccattgtgaaca 30516216  T
Q  217 accatgaactcattagcaggacctgaagtttgtggatgactattcctgggagcaggctcaccatgtgtagcccaacgcgtatgcgcaattccagcatgag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30516215 accatgaactcattagcaggacctgaagtttgtggatgactattcctgggagcaggctcaccatgtgtagcccaacgcgtatgcgcaattccagcatgag 30516116  T
Q  317 tgccgaaactttcctccaagttcaattcaatttcaccaacctctgtttccatcacacaattgcattgtcaaacatcaaaactc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30516115 tgccgaaactttcctccaagttcaattcaatttcaccaacctctgtttccatcacacaattgcattgtcaaacatcaaaactc 30516033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 432 - 671
Target Start/End: Complemental strand, 30516018 - 30515779
Alignment:
Q  432 aagaagagtatgaagatgaaatgaaccttggtaaacggatttgacgagtgattcgatgttgccttcttgacggaagacaagaggaggaaaggaagtgaaa 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30516018 aagaagagtatgaagatgaaatgaaccttggtaaacggatttgacgagtgattcgatgttgccttcttgacggaagacaagaggaggaaaggaagtgaaa 30515919  T
Q  532 tcggaagagcattgaggttttgaagaagaatcaatggcgattccggcggaatcgtaaccacgatattctaaccgtcttaaaccgttgaatagaacttgta 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30515918 tcggaagagcattgaggttttgaagaagaatcaatggcgattccggcggaatcgtaaccacgatattctaaccgtcttaaaccgttgaacagaacttgta 30515819  T
Q  632 agatgtatcttctttctctttccacgttgtaattcagata 671  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30515818 agatgtatcttctttctctttccacgttgtaattcagata 30515779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 38134456 - 38134422
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  38134456 aataatttgagaaaatgacataattcaatgtaatc 38134422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 44172940 - 44172906
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  44172940 aataatttgagaaaatgacataattcaatgtaatc 44172906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 10893395 - 10893359
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatcgcat 63  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10893395 taatttgagaaaatgacataattgaatgtaatcgcat 10893359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 21247792 - 21247752
Alignment:
Q  19 actgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  21247792 actgataataatttgagaaaatgacgtaattcaatgtaatc 21247752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 36314687 - 36314643
Alignment:
Q  15 acacactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||    
T  36314687 acacactcataataatttgagaaaatgacatatttcaatgtaatc 36314643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 19930992 - 19930958
Alignment:
Q  24 caataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||| |||||||||||||||||||||||    
T  19930992 caataatttgataaaatgacataattcaatgtaat 19930958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 2143898 - 2143869
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  2143898 tttgagaaaatgacataattcaatgtaatc 2143869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 2144584 - 2144555
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  2144584 tttgagaaaatgacataattcaatgtaatc 2144555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 5937466 - 5937437
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  5937466 tttgagaaaatgacataattcaatgtaatc 5937437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 7133327 - 7133294
Alignment:
Q  26 ataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||| |||||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatc 7133294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 12278836 - 12278877
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||| |||||||| |||||||||||||||||| ||||||    
T  12278836 acactgataataatttaagaaaatgacataattcagtgtaat 12278877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 23165327 - 23165286
Alignment:
Q  14 gacacactgacaataatttgagaaaatgacataattcaatgt 55  Q
    |||||| |||||||||| |||||||||||||| |||||||||    
T  23165327 gacacattgacaataatctgagaaaatgacatgattcaatgt 23165286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 41229356 - 41229323
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattc 50  Q
    |||| |||||||||||||||||||||||||||||    
T  41229356 acaccgacaataatttgagaaaatgacataattc 41229323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 3119407 - 3119439
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||| |||||||||    
T  3119407 taatttgagaaaatgacataattgaatgtaatc 3119439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 18233659 - 18233615
Alignment:
Q  14 gacacactgacaataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||| || | ||||||||||||||||||||||||| ||||||    
T  18233659 gacacacagatagtaatttgagaaaatgacataattcagtgtaat 18233615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 23930230 - 23930262
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||| |||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatc 23930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 37775993 - 37776025
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||| |||||||||    
T  37775993 taatttgagaaaatgacataattaaatgtaatc 37776025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 41360911 - 41360951
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaa 57  Q
    ||||||| | |||||||||||||| ||||||||||||||||    
T  41360911 acactgatattaatttgagaaaataacataattcaatgtaa 41360951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 5654649 - 5654607
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  5654649 acactgataataatttgagaaaatgacataattcaatgtaatc 5654607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 10546157 - 10546191
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  10546157 aataatttgagaaaatgacataattcaatgtaatc 10546191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 18513291 - 18513257
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  18513291 aataatttgagaaaatgacataattcaatgtaatc 18513257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 11110209 - 11110246
Alignment:
Q  22 gacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  11110209 gacaataatttgagaaaatgacataattcgatgtaatc 11110246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 43188613 - 43188650
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatg 54  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43188613 acactgataataatttgagaaaatgacataattcaatg 43188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 44797020 - 44796979
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaat 58  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  44797020 acaccgacaataatttgagaaaataacataattcaatgtaat 44796979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 26276058 - 26276026
Alignment:
Q  26 ataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||||||||||||||||||    
T  26276058 ataatttgagaaaatgacataattcaatgtaat 26276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 34589753 - 34589722
Alignment:
Q  28 aatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||||    
T  34589753 aatttgagaaaatgacataattcaatgtaatc 34589722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 2976703 - 2976737
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||| |||||||||    
T  2976703 aataatttgagaaaatgacataattgaatgtaatc 2976737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 8457934 - 8457968
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||| |||||||||    
T  8457934 aataatttgagaaaatgacataattgaatgtaatc 8457968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 9996841 - 9996875
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattca 51  Q
    |||||||||||||||||||||||| ||||||||||    
T  9996841 acactgacaataatttgagaaaatcacataattca 9996875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 14465344 - 14465310
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||| |||||    
T  14465344 aataatttgagaaaatgacataattcaatttaatc 14465310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 20743328 - 20743294
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||| |||||||    
T  20743328 aataatttgagaaaatgacataattcagtgtaatc 20743294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 31243598 - 31243564
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||| |||||||    
T  31243598 aataatttgagaaaatgacataattcagtgtaatc 31243564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 43300021 - 43299987
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||| ||||||||||||||||||    
T  43300021 aataatttgagaaaattacataattcaatgtaatc 43299987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 43300625 - 43300659
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||| ||||||||||||||||||    
T  43300625 aataatttgagaaaattacataattcaatgtaatc 43300659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 46180994 - 46180952
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||| ||||||||||||||||||| |||||||||| |||||||    
T  46180994 acacagacaataatttgagaaaataacataattcagtgtaatc 46180952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 51673500 - 51673458
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||    
T  51673500 acactgataataattggagaaaatgacataattcattgtaatc 51673458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 13307891 - 13307920
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  13307891 tttgagaaaatgacataattcaatgtaatc 13307920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 19230359 - 19230326
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  19230359 aataatttgagaaaataacataattcaatgtaat 19230326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 32910560 - 32910593
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||||| ||||||    
T  32910560 aataatttgagaaaatgacataattcagtgtaat 32910593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 37496718 - 37496747
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  37496718 tttgagaaaatgacataattcaatgtaatc 37496747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 2234260 - 2234292
Alignment:
Q  26 ataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||| |||||||||||||||||    
T  2234260 ataatttgagaaaatcacataattcaatgtaat 2234292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 12077837 - 12077869
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||| ||||||||||||||||    
T  12077837 aataatttgagaaaatcacataattcaatgtaa 12077869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 24613751 - 24613719
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||| ||||||||||||||||    
T  24613751 aataatttgagaaaatcacataattcaatgtaa 24613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 28663506 - 28663538
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatcgca 62  Q
    |||||||||||||||||||||||||||| ||||    
T  28663506 tttgagaaaatgacataattcaatgtaaacgca 28663538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 11571594 - 11571631
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatcgca 62  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11571594 aataatttgagaaaatgacataattcaatgtaatcgca 11571631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 3921676 - 3921710
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  3921676 aataatttgagaaaatgacataattcaatgtaatc 3921710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 40747823 - 40747790
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||||||||||||    
T  40747823 aataatttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 14332420 - 14332451
Alignment:
Q  28 aatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||||    
T  14332420 aatttgagaaaatgacataattcaatgtaatc 14332451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 24701148 - 24701109
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatcgcatctg 66  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  24701148 taatttgaaaaaatgacataattgaatgtaatcgcatctg 24701109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 2471263 - 2471229
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||| ||||||||||||||||    
T  2471263 aataatttgagaaaatgagataattcaatgtaatc 2471229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 7988509 - 7988467
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||    
T  7988509 acactgataataatttaagaaagtgacataattcaatgtaatc 7988467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 30847770 - 30847736
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||| ||||||||||||||||||||||||    
T  30847770 aataatttgaaaaaatgacataattcaatgtaatc 30847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 2445880 - 2445913
Alignment:
Q  26 ataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||| |||||    
T  2445880 ataatttgagaaaatgacataattcaatttaatc 2445913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 6427359 - 6427392
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  6427359 aataatttgagaaaatcacataattcaatgtaat 6427392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 18946079 - 18946050
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  18946079 tttgagaaaatgacataattcaatgtaatc 18946050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 29230074 - 29230107
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  29230074 aataatttgagaaaatgacataattgaatgtaat 29230107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 41017454 - 41017421
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  41017454 aataatttgagaaaatgacataatttaatgtaat 41017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 42325569 - 42325601
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    ||||||||||||||||||||||||||| |||||    
T  42325569 aataatttgagaaaatgacataattcagtgtaa 42325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 29198529 - 29198495
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  29198529 aataatttgagaaaatgacataattcaatgtaatc 29198495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 34201096 - 34201063
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||||||||||||    
T  34201096 aataatttgagaaaatgacataattcaatgtaat 34201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 10441213 - 10441245
Alignment:
Q  26 ataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||||||||||||||||||    
T  10441213 ataatttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 3508056 - 3508095
Alignment:
Q  20 ctgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  3508056 ctgataataatttgagaaaataacataattcaatgtaatc 3508095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 12985401 - 12985435
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||| ||||||||||||||||||    
T  12985401 aataatttgagaaaatcacataattcaatgtaatc 12985435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 37225793 - 37225759
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||| ||||||||||||||||||    
T  37225793 aataatttgagaaaataacataattcaatgtaatc 37225759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 40063960 - 40063994
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||| |||||||    
T  40063960 aataatttgagaaaatgacataattcattgtaatc 40063994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 1639499 - 1639532
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||| |||||||||||||||||||||||||||||    
T  1639499 aatattttgagaaaatgacataattcaatgtaat 1639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 7616898 - 7616865
Alignment:
Q  26 ataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||| ||||||||||||||    
T  7616898 ataatttgagaaaatgacacaattcaatgtaatc 7616865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 14740739 - 14740772
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||| |||||||||||||||||||||||||||    
T  14740739 aataatgtgagaaaatgacataattcaatgtaat 14740772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 31119101 - 31119130
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  31119101 tttgagaaaatgacataattcaatgtaatc 31119130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 31236627 - 31236594
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  31236627 aataatttgagaaaatcacataattcaatgtaat 31236594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 42874536 - 42874565
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  42874536 tttgagaaaatgacataattcaatgtaatc 42874565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 1591308 - 1591340
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||| ||||||||||||||||||||||||||||    
T  1591308 aatattttgagaaaatgacataattcaatgtaa 1591340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 3520133 - 3520105
Alignment:
Q  27 taatttgagaaaatgacataattcaatgt 55  Q
    |||||||||||||||||||||||||||||    
T  3520133 taatttgagaaaatgacataattcaatgt 3520105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 6960721 - 6960689
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatcgca 62  Q
    |||||||||||||||||||| ||||||||||||    
T  6960721 tttgagaaaatgacataatttaatgtaatcgca 6960689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 14227231 - 14227263
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||| ||||||||||||||||    
T  14227231 aataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 29447160 - 29447128
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||| ||||||||||||||||    
T  29447160 aataatttgagaaaatcacataattcaatgtaa 29447128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 38902485 - 38902525
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaa 57  Q
    |||| ||||||||| |||||||||||||||||| |||||||    
T  38902485 acaccgacaataatatgagaaaatgacataattaaatgtaa 38902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 11596505 - 11596471
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  11596505 aataatttgagaaaatgacataattcaatgtaatc 11596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 43208322 - 43208290
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||    
T  43208322 taatttgagaaaatgacataattcaatgtaatc 43208290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 28296337 - 28296368
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgta 56  Q
    ||||||||||||||||||||||||||||||||    
T  28296337 aataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 32428984 - 32428945
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgta 56  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  32428984 acactgataataatttgagaaagtgacataattcaatgta 32428945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 2039899 - 2039865
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||| |||||||||||||    
T  2039899 aataatttgagaaaatgacatgattcaatgtaatc 2039865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 18607147 - 18607113
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||| ||||||||||||||||||    
T  18607147 aataatttgagaaaataacataattcaatgtaatc 18607113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 30080559 - 30080517
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||| || | ||||||||||||||||||||||||||||||    
T  30080559 acactgataaaattttgagaaaatgacataattcaatgtaatc 30080517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 31264447 - 31264481
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||| |||||||    
T  31264447 aataatttgagaaaatgacataattcagtgtaatc 31264481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 41558701 - 41558671
Alignment:
Q  28 aatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||||||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaat 41558671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 30098335 - 30098368
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  30098335 aataatttgagaaaatcacataattcaatgtaat 30098368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 38749613 - 38749580
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||| |||||||||||||||||||||||    
T  38749613 aataatttgaaaaaatgacataattcaatgtaat 38749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 39424650 - 39424691
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatcgcatctg 66  Q
    ||||||||||||||||||||| |||||||||| || ||||||    
T  39424650 aataatttgagaaaatgacatgattcaatgtattcacatctg 39424691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 9449478 - 9449510
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||| ||||||||||||||||    
T  9449478 aataatttgagaaaatcacataattcaatgtaa 9449510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 40097653 - 40097617
Alignment:
Q  22 gacaataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  40097653 gacaataatctgagaaaatgatataattcaatgtaat 40097617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 41558733 - 41558701
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||||||||||||||| ||||    
T  41558733 aataatttgagaaaatgacataattcaaagtaa 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 18570981 - 18571015
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||||    
T  18570981 aataatttgagaaaatgacataattcaatgtaatc 18571015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 40681991 - 40682024
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||||||||||||    
T  40681991 aataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 30563418 - 30563450
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||||||||||||||||||||    
T  30563418 aataatttgagaaaatgacataattcaatgtaa 30563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 10254036 - 10254074
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatcgcat 63  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  10254036 aataattgtagaaaatgacataattcaatgtaatcgcat 10254074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 10535809 - 10535775
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||| |||||||    
T  10535809 aataatttgagaaaatgacataattcagtgtaatc 10535775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 31026704 - 31026738
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||| ||||||||||||||||||||||||||    
T  31026704 aataatttaagaaaatgacataattcaatgtaatc 31026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 4332927 - 4332968
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||| ||||||||| |||||| |||||||||||||||||    
T  4332927 acactgataataatttgggaaaatcacataattcaatgtaat 4332968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 12933786 - 12933753
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||| |||||||||||||||||||||||||    
T  12933786 aataatttaagaaaatgacataattcaatgtaat 12933753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 19613663 - 19613630
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  19613663 aataatttgagaaaataacataattcaatgtaat 19613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 37497121 - 37497162
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||| ||||||||||||||||| || |||||||||||||    
T  37497121 acactgataataatttgagaaaatgccacaattcaatgtaat 37497162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 43586050 - 43586021
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  43586050 tttgagaaaatgacataattcaatgtaatc 43586021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 44605189 - 44605156
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  44605189 aataatttgagaaaataacataattcaatgtaat 44605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 9024225 - 9024192
Alignment:
Q  26 ataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatc 9024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 2140531 - 2140499
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||||||||||||||||||||||||||    
T  2140531 aataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 10157995 - 10158027
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatc 10158027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 8148129 - 8148164
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatcg 60  Q
    ||||||||||||||||||||||||| ||||||||||    
T  8148129 aataatttgagaaaatgacataattgaatgtaatcg 8148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 4859163 - 4859129
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||| ||||||||||    
T  4859163 aataatttgagaaaatgacataatccaatgtaatc 4859129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 9629391 - 9629425
Alignment:
Q  24 caataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||| |||||||||||||||||    
T  9629391 caataatttgagaaaatcacataattcaatgtaat 9629425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 10395457 - 10395495
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatcgcat 63  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  10395457 aataatttcagaaaatggcataattcaatgtaatcgcat 10395495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 19602239 - 19602197
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||| |||||||||||||||||| |||||||| |||||||    
T  19602239 acactgataataatttgagaaaatgatataattcagtgtaatc 19602197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 29049894 - 29049928
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||| ||||||||||||||||||    
T  29049894 aataatttgagaaaattacataattcaatgtaatc 29049928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 34446574 - 34446608
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||| |||||||    
T  34446574 aataatttgagaaaatgacataattcagtgtaatc 34446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 6299521 - 6299554
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||| |||||||||||||||    
T  6299521 aataatttgagaaaatgatataattcaatgtaat 6299554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 6306331 - 6306364
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||| |||||||||||||||    
T  6306331 aataatttgagaaaatgatataattcaatgtaat 6306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 6751927 - 6751898
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  6751927 tttgagaaaatgacataattcaatgtaatc 6751898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 9617443 - 9617476
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  9617443 aataatttgagaaaatcacataattcaatgtaat 9617476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 10031584 - 10031613
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  10031584 tttgagaaaatgacataattcaatgtaatc 10031613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 19369831 - 19369860
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||||||    
T  19369831 tttgagaaaatgacataattcaatgtaatc 19369860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 30866194 - 30866161
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  30866194 aataatttgagaaaatcacataattcaatgtaat 30866161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 33076417 - 33076450
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  33076417 aataatttgagaaaatgacataattgaatgtaat 33076450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 10335424 - 10335392
Alignment:
Q  27 taatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||| |||||||||    
T  10335424 taatttgagaaaatgacataattgaatgtaatc 10335392  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 17168903 - 17168935
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    |||||||||| ||||||||||||||||||||||    
T  17168903 aataatttgaaaaaatgacataattcaatgtaa 17168935  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 29959189 - 29959217
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||||||||||||||    
T  29959189 tttgagaaaatgacataattcaatgtaat 29959217  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 32299279 - 32299315
Alignment:
Q  20 ctgacaataatttgagaaaatgacataattcaatgta 56  Q
    |||| |||||||||||||||| |||||||||||||||    
T  32299279 ctgataataatttgagaaaatcacataattcaatgta 32299315  T

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Target: scaffold0571 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 7693 - 7733
Alignment:
Q  19 actgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  7693 actgataataatttgagaaaatgacataattcaatgcaatc 7733  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 20691322 - 20691362
Alignment:
Q  19 actgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  20691322 actgataataatttgagaaaatgacataattcagtgtaatc 20691362  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 9210875 - 9210841
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||||||||||||||| ||||    
T  9210875 aataatttgagaaaatgacataattcaatggaatc 9210841  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 11093571 - 11093613
Alignment:
Q  17 acactgacaataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||    
T  11093571 acactgataataatttgaaaaaatgacataattcaaagtaatc 11093613  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 12704707 - 12704673
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||| ||||||||||||||||||||||||    
T  12704707 aataatttgaaaaaatgacataattcaatgtaatc 12704673  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 21149076 - 21149110
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    ||||||||||||||||||||||||||| |||||||    
T  21149076 aataatttgagaaaatgacataattcagtgtaatc 21149110  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 40017416 - 40017386
Alignment:
Q  28 aatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||||||||||||||||    
T  40017416 aatttgagaaaatgacataattcaatgtaat 40017386  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 40150621 - 40150587
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||||| ||||||||||||||||    
T  40150621 aataatttgagaaaatgatataattcaatgtaatc 40150587  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 52369784 - 52369818
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaatc 59  Q
    |||||||||||||||| ||||||||||||||||||    
T  52369784 aataatttgagaaaattacataattcaatgtaatc 52369818  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 9624650 - 9624683
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||| |||||||||||||||||    
T  9624650 aataatttgagaaaatcacataattcaatgtaat 9624683  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 21110513 - 21110480
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  21110513 aataatttgagaaaatgacataattgaatgtaat 21110480  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 32166233 - 32166200
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  32166233 aataatttgagaaaatgacataattgaatgtaat 32166200  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 41319360 - 41319327
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||| |||||||||||||||||||||||    
T  41319360 aataatttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 16789700 - 16789668
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    ||||||||||||||||||||||||||| |||||    
T  16789700 aataatttgagaaaatgacataattcagtgtaa 16789668  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 102914 - 102947
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||| |||||||||||||||    
T  102914 aataatttgagaaaatgatataattcaatgtaat 102947  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 225318 - 225285
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaat 58  Q
    |||||||||||||||||||||||| |||||||||    
T  225318 aataatttgagaaaatgacataatacaatgtaat 225285  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 8103 - 8071
Alignment:
Q  25 aataatttgagaaaatgacataattcaatgtaa 57  Q
    ||||||||||||||||||||||||||| |||||    
T  8103 aataatttgagaaaatgacataattcagtgtaa 8071  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 18153 - 18121
Alignment:
Q  30 tttgagaaaatgacataattcaatgtaatcgca 62  Q
    ||||||||||| |||||||||||||||||||||    
T  18153 tttgagaaaataacataattcaatgtaatcgca 18121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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