View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_50 (Length: 293)
Name: NF3296_low_50
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 34540445 - 34540168
Alignment:
| Q |
1 |
aagtaatagtcatttattttttatcgttttaagttctcaaagnnnnnnnnn-ctttagttagaaactataaactcaaataagtgtcttatcaaacatgca |
99 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34540445 |
aagtaataatcatttattttttatcgttttaagttctcaaagaaaaaaaaaactttagttagaaactataaactcaaataagtgtcttatcaaacatgca |
34540346 |
T |
|
| Q |
100 |
tacccttaatatatttatgttcgtgtctgcaagtaattgcagtctagtattattccaaaaaattgtagtagacgtgtgtattaaacaaacaaataaatat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34540345 |
tacccttaatatatttatgttcgtgtctgcaagtaattgcagtctagtattattccaaaaaattgtagtagacgtgtgtattaaacaaacaaataaatat |
34540246 |
T |
|
| Q |
200 |
aacaagtgagaagacttagatgtgaagtaaaccaaaaataaatactagctctcaggggtgattcacttgctagtgttg |
277 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34540245 |
aacaagtgggaagacttagatgtgaagtaaaccaaaaataaatactagccctcaggggtgattcacttgctagtgttg |
34540168 |
T |
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