View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_60 (Length: 263)
Name: NF3296_low_60
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1748817 - 1748570
Alignment:
| Q |
1 |
gtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaatatgt |
100 |
Q |
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| T |
1748817 |
gtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaatatgt |
1748718 |
T |
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| Q |
101 |
tttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctct |
200 |
Q |
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| T |
1748717 |
tttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctct |
1748618 |
T |
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| Q |
201 |
tacttttataggtaaaaaccaaatcctaccaattttattggtatatat |
248 |
Q |
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| T |
1748617 |
tacttttataggtaaaaaccaaatcctaccaattttattggtatatat |
1748570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1717465 - 1717239
Alignment:
| Q |
1 |
gtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaatatgt |
100 |
Q |
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| T |
1717465 |
gtgatcatgtcaaatccattggccacagattctaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatttgt |
1717366 |
T |
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| Q |
101 |
tttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctct |
200 |
Q |
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| T |
1717365 |
attcggacaaattcaatggcatgaatgttcaacaaaatattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctct |
1717266 |
T |
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| Q |
201 |
tacttttataggtaaaaaccaaatcct |
227 |
Q |
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| T |
1717265 |
tagttttgtaggtaaataccaaatcct |
1717239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1738962 - 1738734
Alignment:
| Q |
1 |
gtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaatatgt |
100 |
Q |
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|||||||||||||| ||||||| |||||| ||| ||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||| |
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| T |
1738962 |
gtgatcatgtcaaacccattggccacagattccaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatatgt |
1738863 |
T |
|
| Q |
101 |
tttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctct |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||| | ||||| |||||||||| |
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| T |
1738862 |
tttgggacaaattcaatggcatgaatgttcaacaaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctct |
1738763 |
T |
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| Q |
201 |
tacttttataggtaaa--aaccaaatcct |
227 |
Q |
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| T |
1738762 |
tagttttgtaggtaaaataaccaaatcct |
1738734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1754133 - 1753919
Alignment:
| Q |
1 |
gtgatcatgtcaaatccattggatggagattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaatatgt |
100 |
Q |
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||||| |||||||| |||||||||| ||||||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||| | | |
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| T |
1754133 |
gtgataatgtcaaacccattggatgcagattctaaagtacttctctcatttgtcactggattcaacaaagttgtccttgatgtgcattactacaatcttt |
1754034 |
T |
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| Q |
101 |
tttgggaaaaattcaatggcatgaatgttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctct |
200 |
Q |
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|| ||| ||||||| | ||||||||||||||||||||| |||| ||||| || |||||||| ||||||||| || || ||||||||||| ||||| |
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| T |
1754033 |
attcggacaaattcactaacatgaatgttcaacaaaatattgactacataaacaacgaaagagcctcagatcttagcggcgtctcttcaacaaacgctct |
1753934 |
T |
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| Q |
201 |
tacttttataggtaa |
215 |
Q |
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|| |||| ||||||| |
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| T |
1753933 |
tagttttgtaggtaa |
1753919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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