View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_63 (Length: 255)
Name: NF3296_low_63
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 41100869 - 41100698
Alignment:
| Q |
59 |
attgacctaagttgcggtcaactagaagacattgctgttagggggtttggaacagatgaacttctcaaatatatggctcataggtaattagttttgtttg |
158 |
Q |
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| T |
41100869 |
attgacctaagttgcagtcatctggaagacattgctgttagggggtttggaaccgatgaacttctcaaatatatggctcataggtaattagttttctttg |
41100770 |
T |
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| Q |
159 |
tttcaattccaatt----gtttcataataatacaataatttgttaagaactgtactgatccttctttatatg |
226 |
Q |
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| T |
41100769 |
tttcaattccagtttgcagtttcataataatataataatttgttatcaactgtactgatccttcttgatatg |
41100698 |
T |
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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 29746912 - 29746701
Alignment:
| Q |
34 |
catggagaagatttgtcgctgtgcaattgacctaagttgcggtcaactagaagacattgctgttagggggtttggaacagatgaacttctcaaatatatg |
133 |
Q |
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| T |
29746912 |
catggggaagatttgtcgcagtgccattgacctaagtagcagtaatctggaagacattactattagctggtttgcaactgatgaacttcttgaatatttg |
29746813 |
T |
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| Q |
134 |
gctcataggtaatta---------gttttgtttgtttcaattccaattgtttcataataatacaataatttgttaagaactgtactgatccttctttata |
224 |
Q |
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| T |
29746812 |
gctcataggtaattaattagttgcattttgtttgtttcaattcca---gtttcataataatactatattttgttatcaacagcattgatccttcttgcta |
29746716 |
T |
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| Q |
225 |
tgccatcttgcttaa |
239 |
Q |
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| T |
29746715 |
tgccatcttgcttaa |
29746701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29713067 - 29713115
Alignment:
| Q |
1 |
catgacttgtcgttttaactttagtagttcgtgcatggagaagatttgt |
49 |
Q |
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| T |
29713067 |
catgatttgtcgttttaactttagtagttcgtgcatggagaagatttgt |
29713115 |
T |
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