View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_66 (Length: 250)
Name: NF3296_low_66
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_66 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 50127657 - 50127896
Alignment:
| Q |
11 |
cataggtaccaccttctacctgcaatatcttcctaatcaactcagttccagcagttatattaccccattgatcactacccccaatttgaacattaacacc |
110 |
Q |
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| T |
50127657 |
cataggtaccaccttctacctgcaatatcttcctaatcaactcagttccagcagttatattaccccattgatcactacccccaatttgaacattaacacc |
50127756 |
T |
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| Q |
111 |
ctcattctgaaacaaatacaaaaaatcataaccctgcaataactgataagtaaactctgtataactcattccttgttcagattctaatctcttcctaaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50127757 |
ctcattctgaaacaaatacaaaaaatcataaccctgcaataactgataagtaaactctgtataactcattccatgttcagattctaatctcttcctaaca |
50127856 |
T |
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| Q |
211 |
ctctctttagccatcattgaacctactctagcatatttac |
250 |
Q |
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| T |
50127857 |
ctctctttagccatcattgaacctactctagcatatttac |
50127896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 27232346 - 27232107
Alignment:
| Q |
11 |
cataggtaccaccttctacctgcaatatcttcctaatcaactcagttccagcagttatattaccccattgatcactacccccaatttgaacattaacacc |
110 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27232346 |
cataggtaccaccttctacctgtaatatcttcctgatcaactcagttccagcagttatattaccccattgatcactacccccaatttgaacattaacacc |
27232247 |
T |
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| Q |
111 |
ctcattctgaaacaaatacaaaaaatcataaccctgcaataactgataagtaaactctgtataactcattccttgttcagattctaatctcttcctaaca |
210 |
Q |
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|||||||||||||| || ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27232246 |
ctcattctgaaacagatgcaaaaaatcataaccttgcaataactgataagtaaattcagtataactcattccttgttcagattctaatctcttcctaaca |
27232147 |
T |
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| Q |
211 |
ctctctttagccatcattgaacctactctagcatatttac |
250 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
27232146 |
ctctccttagccatcattgaacctactctagcatatttac |
27232107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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