View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_70 (Length: 249)

Name: NF3296_low_70
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_70
NF3296_low_70
[»] chr1 (5 HSPs)
chr1 (1-244)||(51110757-51111000)
chr1 (1-218)||(24549710-24549929)
chr1 (32-218)||(18838017-18838202)
chr1 (91-193)||(50058021-50058122)
chr1 (88-172)||(951198-951282)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-206)||(20197-20406)
[»] chr4 (3 HSPs)
chr4 (23-244)||(13959417-13959637)
chr4 (23-204)||(17871005-17871185)
chr4 (70-179)||(13269358-13269468)
[»] chr5 (2 HSPs)
chr5 (25-204)||(15117274-15117453)
chr5 (39-204)||(17099135-17099303)
[»] chr3 (3 HSPs)
chr3 (1-239)||(23432558-23432797)
chr3 (88-174)||(20961621-20961707)
chr3 (102-202)||(20975560-20975659)
[»] chr6 (5 HSPs)
chr6 (32-204)||(32669138-32669309)
chr6 (45-202)||(28044447-28044604)
chr6 (107-204)||(12464595-12464691)
chr6 (39-191)||(28043582-28043736)
chr6 (77-204)||(13729933-13730059)
[»] chr7 (5 HSPs)
chr7 (81-202)||(30925458-30925578)
chr7 (135-202)||(9739224-9739290)
chr7 (88-174)||(18070326-18070412)
chr7 (58-207)||(10259654-10259802)
chr7 (77-158)||(9893562-9893643)
[»] scaffold0072 (1 HSPs)
scaffold0072 (65-202)||(19040-19177)
[»] chr2 (6 HSPs)
chr2 (114-239)||(20377808-20377933)
chr2 (131-204)||(30947817-30947889)
chr2 (23-158)||(17364208-17364342)
chr2 (103-160)||(20474800-20474857)
chr2 (103-160)||(20476094-20476151)
chr2 (1-96)||(20376425-20376522)
[»] scaffold0062 (1 HSPs)
scaffold0062 (88-161)||(1651-1724)
[»] chr8 (3 HSPs)
chr8 (77-158)||(12376383-12376464)
chr8 (106-158)||(16207983-16208035)
chr8 (104-162)||(28848022-28848080)
[»] scaffold0423 (1 HSPs)
scaffold0423 (77-154)||(14154-14231)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 51111000 - 51110757
Alignment:
Q  1 ccgctttcttggttatttatttcgtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaagaaga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  51111000 ccgctttcttggttatttattttgtgaagatttcctaaatattctctgaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaagcata 51110901  T
Q  101 agaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  51110900 agaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatctacttcagaatattttgtgctgaaatctcgtga 51110801  T
Q  201 ttcaactaaggattagccggtcttgcgtatcaagttcatctcac 244  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||    
T  51110800 ttcaactaatgattagtcggtcttgcgtatcaagttcatttcac 51110757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 24549929 - 24549710
Alignment:
Q  1 ccgctttcttggttatttattt----cgtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaag 96  Q
    |||| |||||||||||||||||    ||||||||||| ||||||||||||| ||||||  | |||||  ||| |||||| ||||| | ||||| ||||||    
T  24549929 ccgccttcttggttatttattttaagcgtgaagattttctaaatattctctgaagattttagtcacg--aagagttgaccaagaatcatgtttttagaag 24549832  T
Q  97 aagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctc 196  Q
     |||  ||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||  ||||||||||||||    
T  24549831 tagagaaagacggtttatacttaacttagtccttaagaatgttgttgcaacgtttaaggaaacatccgatttgcttcagaatatcatgtgctgaaatctc 24549732  T
Q  197 gtgattcaactaaggattagcc 218  Q
    |||||||| || | ||||||||    
T  24549731 gtgattcagctgatgattagcc 24549710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 18838017 - 18838202
Alignment:
Q  32 ttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtcctta 131  Q
    ||||| |||||||||| |||||| | ||| ||| |||  || || |||||||||||||||  ||| |||   || || ||| || |||||||||||| ||    
T  18838017 ttcctgaatattctctgaagatttatttcgcgtgaagaattaaccaagaagcgtgtttctttaagcagagttagacgatttatatttagcttagtccata 18838116  T
Q  132 agaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattcaactaaggattagcc 218  Q
    ||||||||||||||||||||||||||| ||  ||| ||| |||||||| ||||||||||||||||||||||||||| | ||||||||    
T  18838117 agaatgttgttgcaacatttaaggaaaaatttgatctgcgtcagaata-tttgtgctgaaatctcgtgattcaactgatgattagcc 18838202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 50058122 - 50058021
Alignment:
Q  91 tagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctga 190  Q
    |||||| ||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||| ||||| |||||||||    
T  50058122 tagaagcagaggaaggcgatttgtgcttatcttagtccttaagaatgttgttgcaacatttaaggaaacatcttatctgcttca-aatatcttgtgctga 50058024  T
Q  191 aat 193  Q
    |||    
T  50058023 aat 50058021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 951198 - 951282
Alignment:
Q  88 ttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgctt 172  Q
    ||||||||| ||| |||| |||||| | |||| |||| |||||||||||||||||||||||| |||||||||||| ||| |||||    
T  951198 ttctagaagcagaggaagtcggtttatgcttaacttactccttaagaatgttgttgcaacatctaaggaaacatcagatctgctt 951282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 20197 - 20406
Alignment:
Q  1 ccgctttcttggttatttattt----cgtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaag 96  Q
    |||||| ||||| |||||||||    |||||||||||||| |||||||||||||||||  |||||| ||||| |||||| ||||||| ||||||||||||    
T  20197 ccgcttacttggatatttattttaaacgtgaagatttcctgaatattctctaaagatttcattcacataaagagttgaccaagaagcatgtttctagaag 20296  T
Q  97 aagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctc 196  Q
    ||||   ||||||||| |||||| ||| |||||||| || ||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20297 aagagataggcggtttatacttacctttgtccttaaaaaggttcttgcaacatttaaggaaacatcggatctacttcagaatattttgtgctgaaatctc 20396  T
Q  197 gtgattcaac 206  Q
    ||||||||||    
T  20397 gtgattcaac 20406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 13959637 - 13959417
Alignment:
Q  23 cgtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaagaagaagaaggcggtttgtacttagct 122  Q
    |||||||||| ||| |||||||||| |||||| | ||| ||| ||| |||||| |||||||||||||||| ||| | |   ||||||||| |||||| ||    
T  13959637 cgtgaagatt-cctgaatattctctgaagatttacttcgcgtgaagagttgaccaagaagcgtgtttctataagcaaatataggcggtttatacttaact 13959539  T
Q  123 tagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattcaactaaggattagccggtc 222  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||  || | |||||||||  |    
T  13959538 tagtccttaagaatgttgttgcaacatttaaggaaacatcgaatttgcattagaatatcttgtgctgaaatctcgtgattcggctgatgattagccgaac 13959439  T
Q  223 ttgcgtatcaagttcatctcac 244  Q
    ||||  ||||||||||| ||||    
T  13959438 ttgctcatcaagttcatttcac 13959417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 17871005 - 17871185
Alignment:
Q  23 cgtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaagaagaagaaggcggtttgtacttagct 122  Q
    |||||||||||||| |||||||||  |||||| ||||||||||||| | |||| |||||||||||||||||||  | |   ||||  ||| |||||||||    
T  17871005 cgtgaagatttccttaatattctccgaagatttaattcacgtaaagagatgaccaagaagcgtgtttctagaaacaaacataggctatttatacttagct 17871104  T
Q  123 tagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattca 204  Q
    || |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||   ||||||||||||||||||||||    
T  17871105 taatccttaagaatgttgttgtaacatttaaggaaacatcagatctgcttcagaata-aatgtgctgaaatctcgtgattca 17871185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 13269468 - 13269358
Alignment:
Q  70 gttgactaaga-agcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggattt 168  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |    
T  13269468 gttgactaagatagcgtgtttctagaagcagaagaaggcggtttgcacttaacttagtccttaagaatgttgttgcaacatttaaggaaacatccgatct 13269369  T
Q  169 gcttcagaata 179  Q
    |||||||||||    
T  13269368 gcttcagaata 13269358  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 15117453 - 15117274
Alignment:
Q  25 tgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaagaagaag-aaggcggtttgtacttagctt 123  Q
    |||| ||||||| |||||||||| || ||| |||||||||||||||||||| ||||||| |||||||||||| ||    |||||||||| ||||||||||    
T  15117453 tgaaaatttcctgaatattctctgaatatttaattcacgtaaagcgttgaccaagaagcatgtttctagaagcaggtttaaggcggtttatacttagctt 15117354  T
Q  124 agtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattca 204  Q
    |||||||||| |||||||||||||||||||||||| ||| ||| | ||||| ||| | |||||||||||| ||||||||||    
T  15117353 agtccttaaggatgttgttgcaacatttaaggaaatatctgatctacttcataat-tattgtgctgaaatatcgtgattca 15117274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 17099135 - 17099303
Alignment:
Q  39 atattctctaaagattaaattcacgtaaagcgttgactaagaagc-gtgtttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaa-- 135  Q
    ||||| ||||||||||   |||| |||||| |||||| |||||   ||||||||||||| |||  || |||||||  |||| ||||||||||||||||      
T  17099135 atattatctaaagatttgtttcaagtaaagagttgaccaagaaaatgtgtttctagaagcagagaaatgcggtttacacttcgcttagtccttaagaatg 17099234  T
Q  136 -tgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattca 204  Q
     ||||||||||||||||||| ||||||  ||| | |||||||||| | ||||||||| | ||||||||||    
T  17099235 ttgttgttgcaacatttaagaaaacatttgatctacttcagaata-tatgtgctgaattatcgtgattca 17099303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 23432558 - 23432797
Alignment:
Q  1 ccgctttcttggttatttatttc----gtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaag 96  Q
    |||| |||||||||||||||||     ||||||||||||| |||||||||| |||| | ||||||||  ||| |||||| ||||||||||||||||||||    
T  23432558 ccgccttcttggttatttattttaaatgtgaagatttcctgaatattctctgaagagttaattcacg--aagagttgaccaagaagcgtgtttctagaag 23432655  T
Q  97 -aagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatct 195  Q
     ||| | || ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |   | |||||| ||||    
T  23432656 taagga-aatgcggtta-tacttaacttagtccttaagaatgttgttgcaacatttaagtaaacatcggatttgcttcagaaaaacctatgctgatatct 23432753  T
Q  196 cgtgattcaactaaggattagccggtcttgcgtatcaagttcat 239  Q
     |||||||| || | ||||||||||  ||| | |||||||||||    
T  23432754 tgtgattcagctgatgattagccggatttgtgcatcaagttcat 23432797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 20961621 - 20961707
Alignment:
Q  88 ttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttca 174  Q
    ||||||||| ||| ||||  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  20961621 ttctagaagcagaggaagatggtttgtgcttatcttagtccttaagaatgttgttgcaacatttaaggaaacatctgatctgcttca 20961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 20975560 - 20975659
Alignment:
Q  102 gaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgat 201  Q
    |||||| |||||| | || ||||||||||||||||||| |||||||||||||||||||||| ||| | ||||| ||||  |||||||||||| ||| |||    
T  20975560 gaaggcagtttgtgcatatcttagtccttaagaatgtttttgcaacatttaaggaaacatccgatcttcttca-aataacttgtgctgaaatatcgagat 20975658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 32669309 - 32669138
Alignment:
Q  32 ttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtcctta 131  Q
    ||||| |||||||||| ||||||   ||||||| ||| |||||  |||||||||||||||||||| |||   | ||||||| |||||||| |  ||||||    
T  32669309 ttcctgaatattctctgaagatttgtttcacgtgaagagttgaacaagaagcgtgtttctagaagcagagatatgcggtttatacttagcgtgttcctta 32669210  T
Q  132 agaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattca 204  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||| ||||||||||    
T  32669209 agaatgttgttgcaacatttaaggaaacatctgatctgctttagaata-tttgtgctgaaatttcgtgattca 32669138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 28044447 - 28044604
Alignment:
Q  45 tctaaagattaaattcacgtaaagcgttgactaagaa-gcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttg 143  Q
    ||||||||||   ||||||| ||| |||||| ||||| | ||| ||||||||||||| |||||| |||| | |||| |||||||||||||||||||||||    
T  28044447 tctaaagatttgtttcacgtgaagagttgaccaagaaagggtgcttctagaagaagaggaaggcagtttatgcttaacttagtccttaagaatgttgttg 28044546  T
Q  144 caacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgatt 202  Q
    |||||||||||||||||||  || |||||||||||| ||||||||||||| ||| ||||    
T  28044547 caacatttaaggaaacatccaatctgcttcagaata-tttgtgctgaaatatcgagatt 28044604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 12464691 - 12464595
Alignment:
Q  107 cggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattca 204  Q
    |||||| |||||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||    
T  12464691 cggtttatacttagcgtgttccttaagaatgttgttgcaacatttaaggaaacatctgatttgcttcagaata-tttgtgctggaatctcatgattca 12464595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 28043582 - 28043736
Alignment:
Q  39 atattctctaaagattaaattcacgtaaagcgttgactaagaagc-gtgtttctagaagaagaagaaggcggtttgtacttagctt--agtccttaagaa 135  Q
    ||||| ||||||||||   ||||||| ||| |||||| |||||   ||| ||||||||||||| ||||||||||| | |||| ||   ||||||||||||    
T  28043582 atattatctaaagatttgtttcacgtgaagagttgacaaagaaatagtgcttctagaagaagaggaaggcggtttatgcttaactataagtccttaagaa 28043681  T
Q  136 tgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaa 191  Q
    |||||||||||||||||||||||||||  || ||||||| |||| |||||||||||    
T  28043682 tgttgttgcaacatttaaggaaacatccaatctgcttcaaaata-tttgtgctgaa 28043736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 13729933 - 13730059
Alignment:
Q  77 aagaagcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcaga 176  Q
    |||||||||||||||||||| |||     |||||||||||||||  |  ||| |||||||||||||| |||||||||||||||||| ||| |||||||||    
T  13729933 aagaagcgtgtttctagaagcagatattagcggtttgtacttagtgtgttccgtaagaatgttgttgtaacatttaaggaaacatctgatctgcttcaga 13730032  T
Q  177 atattttgtgctgaaatctcgtgattca 204  Q
    ||| |||||| |||||| || |||||||    
T  13730033 ata-tttgtgttgaaatttcatgattca 13730059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 30925458 - 30925578
Alignment:
Q  81 agcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatat 180  Q
    ||||||||||||| || ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| | ||| ||||| ||||||     
T  30925458 agcgtgtttctaggagcagaggaaggcggtttgtgcttaacttagtccttaagaatgttgttgcaacatttaagaaaacagccgatctgctttagaata- 30925556  T
Q  181 tttgtgctgaaatctcgtgatt 202  Q
    ||||||||||||| ||| ||||    
T  30925557 tttgtgctgaaatatcgagatt 30925578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 9739224 - 9739290
Alignment:
Q  135 atgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgatt 202  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||||    
T  9739224 atgttgttgcaacatttaaggaaacatctgatctgcttcagaata-tttgtgctgaaatatcgtgatt 9739290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 18070412 - 18070326
Alignment:
Q  88 ttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttca 174  Q
    ||||||||| |||  |||| | ||||| |||| |||||||||||||||  |||||||| |||||||||||||||| ||| |||||||    
T  18070412 ttctagaagcagagaaaggtgatttgttcttatcttagtccttaagaactttgttgcagcatttaaggaaacatccgatctgcttca 18070326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 10259654 - 10259802
Alignment:
Q  58 ttcacgtaaagcgttgactaagaagcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaa 157  Q
    ||||||| ||| ||||||   |||| ||||||||| ||| |||   || |||||| |||||||| |  | || |||||||||||||||||||||||||||    
T  10259654 ttcacgtgaagagttgaccgggaagtgtgtttctaaaagcagagatagacggtttatacttagcgtgtttctgaagaatgttgttgcaacatttaaggaa 10259753  T
Q  158 acatcggatttgcttcagaatattttgtgctgaaatctcgtgattcaact 207  Q
    |||||  || |||||||||| |   |||| ||||||||| ||||||||||    
T  10259754 acatctaatatgcttcagaa-aacctgtgttgaaatctcatgattcaact 10259802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 9893562 - 9893643
Alignment:
Q  77 aagaagcgtgtttctagaag-aagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaa 158  Q
    |||||||||||| ||||||| ||| | ||| || ||| ||||||||||| |  |||||||||||||||| |||||||||||||    
T  9893562 aagaagcgtgttcctagaagcaagga-aagacgatttatacttagcttaatttttaagaatgttgttgcgacatttaaggaaa 9893643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 19177 - 19040
Alignment:
Q  65 aaagcgttgactaaga-agcgtgtttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcg 163  Q
    |||| |||||| |||| |||||| ||||||||| ||| ||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  19177 aaagagttgaccaagatagcgtggttctagaagcagaggaaggcggtgtgaacttatcttagtccttaagaatgttgtagcaacatttaaggaaacatct 19078  T
Q  164 gatttgcttcagaatattttgtgctgaaatctcgtgatt 202  Q
    ||| ||||||| | ||| |||||||||||| ||| ||||    
T  19077 gatctgcttca-agtatcttgtgctgaaatatcgagatt 19040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 20377808 - 20377933
Alignment:
Q  114 tacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattcaactaaggat 213  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||  | |||| |||||| ||| |||| || | |||    
T  20377808 tacttagcttagtccttaagaatattgttgcaacatttaaggaaacatcatatttgcttcagaaaatcctatgctaaaatcttgtgtttcagctgatgat 20377907  T
Q  214 tagccggtcttgcgtatcaagttcat 239  Q
    ||||| |  ||| | |||||||||||    
T  20377908 tagccagatttgtgcatcaagttcat 20377933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 30947889 - 30947817
Alignment:
Q  131 aagaatgttgttgcaacatttaaggaaacatcggatttgcttcagaatattttgtgctgaaatctcgtgattca 204  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||  ||||||||||||||||| |||||    
T  30947889 aagaatgttgttgcaacatttaaggaaacatctgatatgcttcagaata-cttgtgctgaaatctcgtaattca 30947817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 17364342 - 17364208
Alignment:
Q  23 cgtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaag-aagaagaaggcggtttgtacttagc 121  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||  |  | ||  ||||||||||||||||||||| ||| | ||| |||||| ||||||||    
T  17364342 cgtgaagatt-cctgaatattctctaaagatttgattcatgtggattgctgcttaagaagcgtgtttctagaagtaagga-aagacggtttatacttagc 17364245  T
Q  122 ttagtccttaagaatgttgttgcaacatttaaggaaa 158  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  17364244 ttagtccttaagaatattgttgcgacatttaaggaaa 17364208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 20474800 - 20474857
Alignment:
Q  103 aaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaaca 160  Q
    |||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||    
T  20474800 aaggcggtttatacttagcttaattcttaagaatgttgttgcgacatttaaggaaaca 20474857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 20476094 - 20476151
Alignment:
Q  103 aaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaaca 160  Q
    |||| ||||| ||||||||||| | ||||||||||||||||| |||||||||||||||    
T  20476094 aaggtggtttatacttagcttaattcttaagaatgttgttgcgacatttaaggaaaca 20476151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 20376425 - 20376522
Alignment:
Q  1 ccgctttcttggttatttattt----cgtgaagatttcctaaatattctctaaagattaaattcacgtaaagcgttgactaagaagcgtgtttctagaag 96  Q
    |||| |||||| ||||||||||    |||||||||||||| |||||||||| |||||| |||||||  |||| ||| || |||||||||||||| |||||    
T  20376425 ccgccttcttgattatttattttaaacgtgaagatttcctgaatattctctgaagatttaattcac--aaagagtttaccaagaagcgtgtttcgagaag 20376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 1651 - 1724
Alignment:
Q  88 ttctagaagaagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacat 161  Q
    ||||||||| ||| ||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  1651 ttctagaagcagaggaaggcgatttatgcttaacttagtccttaagaatgttgttgcaacatttaaggaaacat 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 12376383 - 12376464
Alignment:
Q  77 aagaagcgtgtttctagaag-aagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaa 158  Q
    |||||||||||| ||||||| ||| | ||| |||||| ||||||||||| | ||||| ||||||||||| |||||||||||||    
T  12376383 aagaagcgtgttcctagaagcaagga-aagtcggtttatacttagcttaattcttaataatgttgttgcgacatttaaggaaa 12376464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 16207983 - 16208035
Alignment:
Q  106 gcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaa 158  Q
    ||||||| ||||||||||||||||||||| |||||||   |||||||||||||    
T  16207983 gcggtttatacttagcttagtccttaagattgttgttttgacatttaaggaaa 16208035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 28848022 - 28848080
Alignment:
Q  104 aggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaaggaaacatc 162  Q
    |||||||||||||||||  |  | ||||||||||||||| ||||||||||| |||||||    
T  28848022 aggcggtttgtacttagtgtgtttcttaagaatgttgttacaacatttaagaaaacatc 28848080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 14231 - 14154
Alignment:
Q  77 aagaagcgtgtttctagaag-aagaagaaggcggtttgtacttagcttagtccttaagaatgttgttgcaacatttaag 154  Q
    |||||||||||| ||||||| ||| | ||| |||||| ||||||||||| | |||| |||||||||||| |||||||||    
T  14231 aagaagcgtgttcctagaagcaagga-aagacggtttatacttagcttaattcttacgaatgttgttgcgacatttaag 14154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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