View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_71 (Length: 249)
Name: NF3296_low_71
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 55334686 - 55334917
Alignment:
| Q |
1 |
cctgcattatgagggtgaggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgaaggataaac |
100 |
Q |
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| T |
55334686 |
cctgcattatgagggtgaggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgaaggataaac |
55334785 |
T |
|
| Q |
101 |
tggaatttatacagttatcttttgattcaatattactattagcatcaagcttctactattatgcaatgtcgattgttctatagcagttttgaggttatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55334786 |
tggaatttatacagttatcttttgattcaatattactattagcatcaagcttctactattatgcaatgtcgattgttctatagcagttttgaggttatag |
55334885 |
T |
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| Q |
201 |
tagttttgtggtcaagatatttaatacatttc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
55334886 |
tagttttgtggtcaagatatttaatacatttc |
55334917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43602877 - 43602644
Alignment:
| Q |
1 |
cctgcattatgagggtg--aggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgaaggataa |
98 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43602877 |
cctgcattatgagggtgtgaggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgtaggataa |
43602778 |
T |
|
| Q |
99 |
actggaatttatacagttatcttttgattcaatattactattagcatcaagcttctactattatgcaatgtcgattgttctatagcagttttgaggttat |
198 |
Q |
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| T |
43602777 |
actggaatttatacagttatcttttgattcaatattactattagcatcaagctcctactattatgcactgtcaattgttctatagcagttttgaggttat |
43602678 |
T |
|
| Q |
199 |
agtagttttgtggtcaagatatttaatacatttc |
232 |
Q |
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|||||||||| |||||||||||||||||| |||| |
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| T |
43602677 |
agtagttttgcggtcaagatatttaatacttttc |
43602644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43608369 - 43608136
Alignment:
| Q |
1 |
cctgcattatgagggtg--aggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgaaggataa |
98 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43608369 |
cctgcattatgagggtgtgaggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgtaggataa |
43608270 |
T |
|
| Q |
99 |
actggaatttatacagttatcttttgattcaatattactattagcatcaagcttctactattatgcaatgtcgattgttctatagcagttttgaggttat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
43608269 |
actggaatttatacagttatcttttgattcaatattactattagcatcaagctcctactattatgcactgtcaattgttctatagcagttttgaggttat |
43608170 |
T |
|
| Q |
199 |
agtagttttgtggtcaagatatttaatacatttc |
232 |
Q |
| |
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|||||||||| |||||||||||||||||| |||| |
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| T |
43608169 |
agtagttttgcggtcaagatatttaatacttttc |
43608136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43613861 - 43613628
Alignment:
| Q |
1 |
cctgcattatgagggtg--aggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgaaggataa |
98 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43613861 |
cctgcattatgagggtgtgaggcgttagatgagagcgcatgaatagtattgttagggtatgactgcatgtctgtgaggaaccttggtccttgtaggataa |
43613762 |
T |
|
| Q |
99 |
actggaatttatacagttatcttttgattcaatattactattagcatcaagcttctactattatgcaatgtcgattgttctatagcagttttgaggttat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
43613761 |
actggaatttatacagttatcttttgattcaatattactattagcatcaagctcctactattatgcactgtcaattgttctatagcagttttgaggttat |
43613662 |
T |
|
| Q |
199 |
agtagttttgtggtcaagatatttaatacatttc |
232 |
Q |
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|||||||||| |||||||||||||||||| |||| |
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| T |
43613661 |
agtagttttgcggtcaagatatttaatacttttc |
43613628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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