View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_73 (Length: 245)
Name: NF3296_low_73
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 20276262 - 20276109
Alignment:
| Q |
5 |
caaatgaaaatattgtttttcatttgaatattt-atcaacgtcgttggccg---taaggtagcagttgagttggtctgttaagaaaagtttcgagttggc |
100 |
Q |
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| T |
20276262 |
caaaggaaaatattgtttttcatttgaatattttatcaacgacgttggccgccgtaaggtagcagttgatttggtctgttaaaaaaagttttaatttggc |
20276163 |
T |
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| Q |
101 |
tttgattagtaattttcagacaataagagacacttatctattgtatttattttt |
154 |
Q |
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|||||||| ||||||||||||||| |||||||||| |||||||||||| ||||| |
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| T |
20276162 |
tttgattaataattttcagacaatgagagacacttttctattgtatttgttttt |
20276109 |
T |
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