View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3296_low_77 (Length: 239)
Name: NF3296_low_77
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_77 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 6141326 - 6141445
Alignment:
| Q |
94 |
gagtaaaagcctagaaggtcaataagatatgtaatatatgtgagaataccatcaccagaatatcgataatttgttaaagt-ccaccaacaatattcagat |
192 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||| | ||||||||||||||||||| |
|
|
| T |
6141326 |
gagtaagagcctacaaggtcaataagatatgtt---tatgtgagaataccatcaccaaaatatctacaatttgttaaaattccaccaacaatattcagat |
6141422 |
T |
|
| Q |
193 |
gatcaacttcaaaaaccttagca |
215 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
6141423 |
aatcaacttcaaaagccttagca |
6141445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 65550 - 65592
Alignment:
| Q |
182 |
aatattcagatgatcaacttcaaaaaccttagcacaaatttga |
224 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
65550 |
aatattcatatgatcaacttcaaaaaccttagcacatatttga |
65592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 26651754 - 26651796
Alignment:
| Q |
182 |
aatattcagatgatcaacttcaaaaaccttagcacaaatttga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
26651754 |
aatattcagatgatcaacttcaaaaaccttggcacatatttga |
26651796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 26757722 - 26757764
Alignment:
| Q |
182 |
aatattcagatgatcaacttcaaaaaccttagcacaaatttga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
26757722 |
aatattcagatgatcaacttcaaaaaccttggcacatatttga |
26757764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 27421813 - 27421771
Alignment:
| Q |
182 |
aatattcagatgatcaacttcaaaaaccttagcacaaatttga |
224 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
27421813 |
aatattcatatgatcaacttcaaaaaccttagcacatatttga |
27421771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University